Strain identifier

BacDive ID: 130157

Type strain: Yes

Species: Martelella radicis

Strain Designation: BM5-7

Culture col. no.: DSM 28101, LMG 27958

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General

@ref: 21650

BacDive-ID: 130157

DSM-Number: 28101

keywords: 16S sequence, genome sequence, Bacteria, mesophilic

description: Martelella radicis BM5-7 is a mesophilic bacterium that was isolated from rhizosphere soil of a mangrove forest.

strain history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; BM5-7 <- D.-C. Zhang, CAS

doi: 10.13145/bacdive130157.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Rhizobiaceae
  • genus: Martelella
  • species: Martelella radicis
  • full scientific name: Martelella radicis Zhang and Margesin 2014

@ref: 21650

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Aurantimonadaceae

genus: Martelella

species: Martelella radicis

full scientific name: Martelella radicis Zhang and Margesin 2014

strain designation: BM5-7

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 21650
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf

culture temp

  • @ref: 21650
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 21650
  • sample type: rhizosphere soil of a mangrove forest
  • geographic location: Hainan Province, Beigang Island
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mangrove
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil
#Host Body-Site#Plant#Rhizosphere

Safety information

risk assessment

  • @ref: 21650
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21650
  • description: Martelella radicis strain BM5-7 16S ribosomal RNA gene, partial sequence
  • accession: KF560339
  • length: 1346
  • database: ena
  • NCBI tax ID: 1397476

Genome sequences

  • @ref: 66792
  • description: Martelella radicis DSM 28101
  • accession: 2829929398
  • assembly level: permanent
  • database: img
  • NCBI tax ID: 1397476

GC content

  • @ref: 21650
  • GC-content: 61.0
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21650

culture collection no.: DSM 28101, LMG 27958

straininfo link

@refpassport
20218http://www.straininfo.net/strains/897665
20218http://www.straininfo.net/strains/892081

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
21650Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28101Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28101)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes