Strain identifier
BacDive ID: 130157
Type strain: 
Species: Martelella radicis
Strain Designation: BM5-7
Strain history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; BM5-7 <- D.-C. Zhang, CAS
NCBI tax ID(s): 1397476 (species)
version 8.1 (current version)
General
@ref: 21650
BacDive-ID: 130157
DSM-Number: 28101
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Martelella radicis BM5-7 is a mesophilic, Gram-negative bacterium that was isolated from rhizosphere soil of a mangrove forest.
NCBI tax id
- NCBI tax id: 1397476
- Matching level: species
strain history
- @ref: 21650
- history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; BM5-7 <- D.-C. Zhang, CAS
doi: 10.13145/bacdive130157.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Martelella
- species: Martelella radicis
- full scientific name: Martelella radicis Zhang and Margesin 2014
@ref: 21650
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhizobiaceae
genus: Martelella
species: Martelella radicis
full scientific name: Martelella radicis Zhang and Margesin 2014
strain designation: BM5-7
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.979
Culture and growth conditions
culture medium
- @ref: 21650
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 21650
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.998 |
Isolation, sampling and environmental information
isolation
- @ref: 21650
- sample type: rhizosphere soil of a mangrove forest
- geographic location: Hainan Province, Beigang Island
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Mangrove |
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
| #Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_707.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_433;97_495;98_567;99_707&stattab=map
- Last taxonomy: Martelella
- 16S sequence: KF560339
- Sequence Identity:
- Total samples: 1967
- soil counts: 656
- aquatic counts: 539
- animal counts: 547
- plant counts: 225
Safety information
risk assessment
- @ref: 21650
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21650
- description: Martelella radicis strain BM5-7 16S ribosomal RNA gene, partial sequence
- accession: KF560339
- length: 1346
- database: ena
- NCBI tax ID: 1397476
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Martelella radicis DSM 28101 | GCA_014196625 | scaffold | ncbi | 1397476 |
| 66792 | Martelella radicis strain DSM 28101 | 1397476.3 | wgs | patric | 1397476 |
| 66792 | Martelella radicis DSM 28101 | 2829929398 | draft | img | 1397476 |
GC content
- @ref: 21650
- GC-content: 61.0
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 95.942 | no |
| gram-positive | no | 97.152 | no |
| anaerobic | no | 98.305 | no |
| aerobic | yes | 77.456 | no |
| halophile | no | 59.179 | no |
| spore-forming | no | 97.378 | no |
| glucose-util | yes | 90.17 | no |
| thermophile | no | 97.635 | yes |
| glucose-ferment | no | 82.527 | no |
| motile | no | 89.997 | no |
External links
@ref: 21650
culture collection no.: DSM 28101, LMG 27958
straininfo link
- @ref: 88710
- straininfo: 391384
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24944336 | Martelella radicis sp. nov. and Martelella mangrovi sp. nov., isolated from mangrove sediment. | Zhang DC, Margesin R | Int J Syst Evol Microbiol | 10.1099/ijs.0.066373-0 | 2014 | Alphaproteobacteria/*classification/genetics/isolation & purification, Avicennia/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, Ubiquinone/chemistry | Genetics |
| Phylogeny | 27393138 | Martelella suaedae sp. nov. and Martelella limonii sp. nov., isolated from the root of halophytes. | Chung EJ, Hwang JM, Kim KH, Jeon CO, Chung YR | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001288 | 2016 | Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Chenopodiaceae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, Plant Roots/*microbiology, Plumbaginaceae/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Salt-Tolerant Plants/*microbiology, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21650 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28101 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28101) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 88710 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID391384.1 |