Strain identifier

BacDive ID: 130155

Type strain: Yes

Species: Marinobacter salarius

Strain Designation: R9sw1

Strain history: CIP <- 2013, E. Ivanova, Swinburne Univ., Hawthorn, Victoria, Australia: strain R9SW1

NCBI tax ID(s): 1420917 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22044

BacDive-ID: 130155

DSM-Number: 27081

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Marinobacter salarius R9sw1 is a mesophilic, Gram-negative, motile bacterium that was isolated from sea water.

NCBI tax id

  • NCBI tax id: 1420917
  • Matching level: species

strain history

@refhistory
22044<- E. P. Ivanova, Swinburne Univ. Technol., IRIS, Hawthorn, Australia; R9sw1
67770E. P. Ivanova R9SW1.
122360CIP <- 2013, E. Ivanova, Swinburne Univ., Hawthorn, Victoria, Australia: strain R9SW1

doi: 10.13145/bacdive130155.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter salarius
  • full scientific name: Marinobacter salarius Ng et al. 2015

@ref: 22044

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter salarius

full scientific name: Marinobacter salarius Ng et al. 2015

strain designation: R9sw1

type strain: yes

Morphology

cell morphology

  • @ref: 122360
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22044BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
122360CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
22044positivegrowth25mesophilic
67770positivegrowth25mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeisolation date
22044sea waterPacific Ocean, Sea of Japan, Chazhma Bay (42°53'38'' N 132°22'02'' E)RussiaRUSAsia42.8939132.367
67770Seawater from a radioactive contaminated area in Chazhma BayGulf of Peter the GreatRussiaRUS
122360Environment, SeawaterChazma BaySea of Japan2000-01-03

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_4771.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_1317;97_1564;98_3576;99_4771&stattab=map
  • Last taxonomy: Marinobacter
  • 16S sequence: KJ547705
  • Sequence Identity:
  • Total samples: 424
  • soil counts: 8
  • aquatic counts: 358
  • animal counts: 54
  • plant counts: 4

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
220441Risk group (German classification)
1223601Risk group (French classification)

Sequence information

16S sequences

  • @ref: 22044
  • description: Marinobacter salarius strain R9SW1 16S ribosomal RNA gene, partial sequence
  • accession: KJ547705
  • length: 1531
  • database: ena
  • NCBI tax ID: 1420917

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Marinobacter salarius R9SW1GCA_000831005completencbi1420917
66792Marinobacter salarius R9SW11420917.4completepatric1420917
66792Marinobacter salarius R9SW12687453324completeimg1420917

GC content

  • @ref: 22044
  • GC-content: 57.1
  • method: sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes91.487no
flagellatedyes86.618no
gram-positiveno98.907no
anaerobicno98.997no
aerobicyes94.916no
halophileyes88.471no
spore-formingno96.93no
glucose-utilyes66.899no
thermophileno99.048yes
glucose-fermentno86.405no

External links

@ref: 22044

culture collection no.: DSM 27081, CIP 110588, JCM 19399, KMM 7502, LMG 27497

straininfo link

  • @ref: 88708
  • straininfo: 399192

literature

  • topic: Phylogeny
  • Pubmed-ID: 25198502
  • title: Marinobacter salarius sp. nov. and Marinobacter similis sp. nov., isolated from sea water.
  • authors: Ng HJ, Lopez-Perez M, Webb HK, Gomez D, Sawabe T, Ryan J, Vyssotski M, Bizet C, Malherbe F, Mikhailov VV, Crawford RJ, Ivanova EP
  • journal: PLoS One
  • DOI: 10.1371/journal.pone.0106514
  • year: 2014
  • mesh: DNA, Bacterial/genetics, *Marine Biology, Marinobacter/*classification/isolation & purification, Nucleic Acid Hybridization, Phylogeny, Seawater/*microbiology, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
  • topic2: Enzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22044Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27081Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27081)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88708Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399192.1
122360Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110588Collection of Institut Pasteur (CIP 110588)