Strain identifier
BacDive ID: 130155
Type strain: 
Species: Marinobacter salarius
Strain Designation: R9sw1
Strain history: CIP <- 2013, E. Ivanova, Swinburne Univ., Hawthorn, Victoria, Australia: strain R9SW1
NCBI tax ID(s): 1420917 (species)
version 9.3 (current version)
General
@ref: 22044
BacDive-ID: 130155
DSM-Number: 27081
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped
description: Marinobacter salarius R9sw1 is a mesophilic, Gram-negative, motile bacterium that was isolated from sea water.
NCBI tax id
- NCBI tax id: 1420917
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22044 | <- E. P. Ivanova, Swinburne Univ. Technol., IRIS, Hawthorn, Australia; R9sw1 |
| 67770 | E. P. Ivanova R9SW1. |
| 122360 | CIP <- 2013, E. Ivanova, Swinburne Univ., Hawthorn, Victoria, Australia: strain R9SW1 |
doi: 10.13145/bacdive130155.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marinobacter
- species: Marinobacter salarius
- full scientific name: Marinobacter salarius Ng et al. 2015
@ref: 22044
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacter
species: Marinobacter salarius
full scientific name: Marinobacter salarius Ng et al. 2015
strain designation: R9sw1
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | cell shape | motility |
|---|---|---|---|---|
| 125438 | negative | 98 | ||
| 125439 | negative | 96.3 | ||
| 122360 | negative | rod-shaped | yes |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 22044 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
| 122360 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 22044 | positive | growth | 25 |
| 67770 | positive | growth | 25 |
Physiology and metabolism
spore formation
- @ref: 125439
- spore formation: no
- confidence: 95.4
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude | isolation date |
|---|---|---|---|---|---|---|---|---|
| 22044 | sea water | Pacific Ocean, Sea of Japan, Chazhma Bay (42°53'38'' N 132°22'02'' E) | Russia | RUS | Asia | 42.8939 | 132.367 | |
| 67770 | Seawater from a radioactive contaminated area in Chazhma Bay | Gulf of Peter the Great | Russia | RUS | ||||
| 122360 | Environment, Seawater | Chazma Bay | Sea of Japan | 2000-01-03 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_4771.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_1317;97_1564;98_3576;99_4771&stattab=map
- Last taxonomy: Marinobacter
- 16S sequence: KJ547705
- Sequence Identity:
- Total samples: 424
- soil counts: 8
- aquatic counts: 358
- animal counts: 54
- plant counts: 4
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 22044 | 1 | Risk group (German classification) |
| 122360 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 22044
- description: Marinobacter salarius strain R9SW1 16S ribosomal RNA gene, partial sequence
- accession: KJ547705
- length: 1531
- database: nuccore
- NCBI tax ID: 1420917
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marinobacter salarius R9SW1 | GCA_000831005 | complete | ncbi | 1420917 |
| 66792 | Marinobacter salarius R9SW1 | 1420917.4 | complete | patric | 1420917 |
| 66792 | Marinobacter salarius R9SW1 | 2687453324 | complete | img | 1420917 |
GC content
- @ref: 22044
- GC-content: 57.1
- method: sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.44 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 87.098 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.787 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.44 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 85.699 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 95.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 78 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 96.3 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 85.6 |
External links
@ref: 22044
culture collection no.: DSM 27081, CIP 110588, JCM 19399, KMM 7502, LMG 27497
straininfo link
- @ref: 88708
- straininfo: 399192
literature
- topic: Phylogeny
- Pubmed-ID: 25198502
- title: Marinobacter salarius sp. nov. and Marinobacter similis sp. nov., isolated from sea water.
- authors: Ng HJ, Lopez-Perez M, Webb HK, Gomez D, Sawabe T, Ryan J, Vyssotski M, Bizet C, Malherbe F, Mikhailov VV, Crawford RJ, Ivanova EP
- journal: PLoS One
- DOI: 10.1371/journal.pone.0106514
- year: 2014
- mesh: DNA, Bacterial/genetics, *Marine Biology, Marinobacter/*classification/isolation & purification, Nucleic Acid Hybridization, Phylogeny, Seawater/*microbiology, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22044 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27081 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27081) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88708 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399192.1 | |
| 122360 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110588 | Collection of Institut Pasteur (CIP 110588) | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |