Archive BacDiveID:10.13145/bacdive130154.20230509.8.1

Strain identifier

BacDive ID: 130154

Type strain:

Species: Agarivorans sp.

Strain Designation: LQ48

Strain history: <- X. Xu, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China; LQ48 <- M. Long

NCBI tax ID(s): 1872412 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 21987

BacDive-ID: 130154

DSM-Number: 22852

keywords: 16S sequence, Bacteria, mesophilic

description: Agarivorans sp. LQ48 is a mesophilic bacterium that was isolated from seaweed Enteromorpha prolifera.

NCBI tax id

NCBI tax id: 1872412
Matching level: species

strain history

@ref: 21987
history: <- X. Xu, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China; LQ48 <- M. Long

doi: 10.13145/bacdive130154.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Agarivorans
species: Agarivorans sp.
full scientific name: Agarivorans Kurahashi and Yokota 2004

@ref: 21987

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Agarivorans

species: Agarivorans sp.

full scientific name: Agarivorans sp.

strain designation: LQ48

type strain: no

Culture and growth conditions

culture medium

@ref: 21987
name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
growth: yes
link: https://mediadive.dsmz.de/medium/514
composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@ref: 21987
growth: positive
type: growth
temperature: 28
range: mesophilic

Physiology and metabolism

compound production

@ref: 21987
compound: beta agarase

Isolation, sampling and environmental information

isolation

@ref: 21987
sample type: seaweed Enteromorpha prolifera
host species: Enteromorpha prolifera
geographic location: Xiamen sea coast
country: China
origin.country: CHN
continent: Asia

isolation source categories

Cat1: #Host
Cat2: #Plants
Cat3: #Aquatic plant

taxonmaps

@ref: 69479
File name: preview.99_2956.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_361;96_1556;97_1856;98_2281;99_2956&stattab=map
Last taxonomy: Agarivorans gilvus subclade
16S sequence: FJ593496
Sequence Identity:
Total samples: 180
soil counts: 3
aquatic counts: 154
animal counts: 20
plant counts: 3

Sequence information

16S sequences

@ref: 21987
description: Agarivorans sp. LQ48 16S ribosomal RNA gene, partial sequence
accession: FJ593496
length: 1499
database: ena
NCBI tax ID: 590741

External links

@ref: 21987

culture collection no.: DSM 22852

straininfo link

@ref: 88707
straininfo: 405181

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
21987	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-22852	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22852)
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
88707	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID405181.1