Strain identifier

BacDive ID: 130152

Type strain: Yes

Species: Marinobacterium mangrovicola

Strain Designation: Gal22

Strain history: CIP <- 2013, G. Alfaro-Espinoza, Jacobs Univ. Bremen, Bremen, Germany: strain Gal22

NCBI tax ID(s): 1476959 (species)

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General

@ref: 21646

BacDive-ID: 130152

DSM-Number: 27697

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Marinobacterium mangrovicola Gal22 is a mesophilic, motile bacterium that was isolated from mangrove root of Rhizophora mangle cultivated in an aquarium.

NCBI tax id

  • NCBI tax id: 1476959
  • Matching level: species

strain history

@refhistory
21646<- G. Alfaro, Jacobs University Bremen, Germany; Gal22 <- G. Alfaro and M. Ullrich
120775CIP <- 2013, G. Alfaro-Espinoza, Jacobs Univ. Bremen, Bremen, Germany: strain Gal22

doi: 10.13145/bacdive130152.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacterium
  • species: Marinobacterium mangrovicola
  • full scientific name: Marinobacterium mangrovicola Alfaro-Espinoza and Ullrich 2014

@ref: 21646

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacterium

species: Marinobacterium mangrovicola

full scientific name: Marinobacterium mangrovicola Alfaro-Espinoza and Ullrich 2014

strain designation: Gal22

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.639
6948099.999negative
120775yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21646BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
120775CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

  • @ref: 21646
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.993

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentgeographic locationisolation date
21646mangrove root of Rhizophora mangle cultivated in an aquariumRhizophora mangleGermanyDEUEurope
120775Food, Roots of Rhizophora mangle, cultivated in an aquarium in vitro mangrove ecosystem.GermanyDEUEuropeAquarium containing R. mangle seedings located at Jacobs University Bremen, Germany2010-09-01

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Water reservoir (Aquarium/pool)
#Environmental#Aquatic#Mangrove
#Host#Plants#Tree
#Host Body-Site#Plant#Root (Rhizome)

taxonmaps

  • @ref: 69479
  • File name: preview.99_50105.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_240;96_16586;97_22145;98_27833;99_50105&stattab=map
  • Last taxonomy: Marinobacterium mangrovicola
  • 16S sequence: KJ021872
  • Sequence Identity:
  • Total samples: 305
  • soil counts: 5
  • aquatic counts: 295
  • animal counts: 4
  • plant counts: 1

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
216461Risk group (German classification)
1207751Risk group (French classification)

Sequence information

16S sequences

  • @ref: 21646
  • description: Marinobacterium mangrovicola strain Gal22 16S ribosomal RNA gene, partial sequence
  • accession: KJ021872
  • length: 1508
  • database: ena
  • NCBI tax ID: 1476959

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Marinobacterium mangrovicola DSM 27697GCA_004339595scaffoldncbi1476959
66792Marinobacterium mangrovicola strain DSM 276971476959.3wgspatric1476959
66792Marinobacterium mangrovicola DSM 276972734482069draftimg1476959

GC content

  • @ref: 21646
  • GC-content: 57.0
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes93.475no
flagellatedyes91.069no
gram-positiveno98.873no
anaerobicno98.558no
aerobicyes73.488no
halophileyes85.9no
spore-formingno96.289no
thermophileno99.379no
glucose-utilyes83.767no
glucose-fermentno83.045no

External links

@ref: 21646

culture collection no.: DSM 27697, CIP 110653

straininfo link

  • @ref: 88705
  • straininfo: 401026

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25217624Marinobacterium mangrovicola sp. nov., a marine nitrogen-fixing bacterium isolated from mangrove roots of Rhizophora mangle.Alfaro-Espinoza G, Ullrich MSInt J Syst Evol Microbiol10.1099/ijs.0.067462-02014Alteromonadaceae/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, *Nitrogen Fixation, Nucleic Acid Hybridization, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Rhizophoraceae/*microbiology, Seawater, Sequence Analysis, DNA, Ubiquinone/chemistryGenetics
Phylogeny27265099Marinobacterium zhoushanense sp. nov., isolated from surface seawater.Han SB, Wang RJ, Yu XY, Su Y, Sun C, Fu GY, Zhang CY, Zhu XF, Wu MInt J Syst Evol Microbiol10.1099/ijsem.0.0012132016Alteromonadaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21646Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27697Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27697)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88705Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401026.1
120775Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110653Collection of Institut Pasteur (CIP 110653)