Strain identifier

BacDive ID: 130151

Type strain: Yes

Species: Alteromonas australica

Strain Designation: H 17, H17

Strain history: CIP <- 2008, E. Ivanova, Swinburne Univ., Victoria, Australia: strain H17

NCBI tax ID(s): 589873 (species)

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General

@ref: 21470

BacDive-ID: 130151

DSM-Number: 27080

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, motile

description: Alteromonas australica H 17 is a facultative anaerobe, mesophilic, motile bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 589873
  • Matching level: species

strain history

@refhistory
339312008, E. Ivanova, Swinbure Univ., Victoria, Australia: strain H17
21470<- E. Ivanova, Swinburne Univ. of Technol., IRIS, Australia; H17 <- H. Webb
116642CIP <- 2008, E. Ivanova, Swinburne Univ., Victoria, Australia: strain H17

doi: 10.13145/bacdive130151.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Alteromonas
  • species: Alteromonas australica
  • full scientific name: Alteromonas australica Ivanova et al. 2013

@ref: 21470

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Alteromonas

species: Alteromonas australica

full scientific name: Alteromonas australica Ivanova et al. 2013

strain designation: H 17, H17

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes97.616
6948099.998negative
116642yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33931Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
21470BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yesName: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled waterhttps://mediadive.dsmz.de/medium/514
116642CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
116642CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
21470positivegrowth25mesophilic
33931positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 116642
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.977

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11664217632nitrate-reduction
11664216301nitrite-reduction

metabolite production

  • @ref: 116642
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
116642oxidase+
116642catalase+1.11.1.6
116642urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116642-+++-++---++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
21470seawaterPacific Ocean, Port Phillip Bay of the Tasman SeaAustraliaAUSAustralia and Oceania
116642Environment, Sea waterMelbourneAustraliaAUSAustralia and Oceania2007

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_380.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_261;97_285;98_318;99_380&stattab=map
  • Last taxonomy: Alteromonas
  • 16S sequence: FJ595485
  • Sequence Identity:
  • Total samples: 2572
  • soil counts: 27
  • aquatic counts: 2470
  • animal counts: 66
  • plant counts: 9

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
214701Risk group (German classification)
1166421Risk group (French classification)

Sequence information

16S sequences

  • @ref: 21470
  • description: Alteromonas australica strain H 17 16S ribosomal RNA gene, partial sequence
  • accession: FJ595485
  • length: 1521
  • database: ena
  • NCBI tax ID: 589873

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alteromonas australica H 17GCA_000730385completencbi589873
66792Alteromonas australica H172585427644completeimg589873

GC content

  • @ref: 21470
  • GC-content: 43.0
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes89.109no
flagellatedyes89.023no
gram-positiveno98.99no
anaerobicno98.573no
aerobicyes87.399no
halophileyes82.812no
spore-formingno97.109no
thermophileno99.652yes
glucose-utilyes89.072no
glucose-fermentno82.195no

External links

@ref: 21470

culture collection no.: DSM 27080, CIP 109921, KMM 6016

straininfo link

  • @ref: 88704
  • straininfo: 390252

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23291832Alteromonas australica sp. nov., isolated from the Tasman Sea.Ivanova EP, Ng HJ, Webb HK, Kurilenko VV, Zhukova NV, Mikhailov VV, Ponamoreva ON, Crawford RJAntonie Van Leeuwenhoek10.1007/s10482-012-9869-x2013Alteromonas/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Pacific Ocean, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNAGenetics
Phylogeny25326795Ecophysiological diversity of a novel member of the genus Alteromonas, and description of Alteromonas mediterranea sp. nov.Ivanova EP, Lopez-Perez M, Zabalos M, Nguyen SH, Webb HK, Ryan J, Lagutin K, Vyssotski M, Crawford RJ, Rodriguez-Valera FAntonie Van Leeuwenhoek10.1007/s10482-014-0309-y2014Alteromonas/*classification/genetics/*physiology, Atlantic Ocean, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genome, Bacterial, Locomotion, Mediterranean Sea, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Sodium Chloride/toxicityGenetics
Phylogeny32614764Alteromonas profundi sp. nov., isolated from the Indian Ocean.Shen X, Zhu S, Dong B, Chen Y, Xue Z, Ren N, Chen T, Chen X, Yang J, Chen JInt J Syst Evol Microbiol10.1099/ijsem.0.0043082020Alteromonas/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Indian Ocean, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21470Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27080Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27080)
33931Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7719
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88704Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID390252.1
116642Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109921Collection of Institut Pasteur (CIP 109921)