Strain identifier

BacDive ID: 130145

Type strain: No

Species: Achromobacter marplatensis

Strain Designation: AU 14580, R-46660

Strain history: CIP <- 2014, CCUG <- 2011, LMG

NCBI tax ID(s): 470868 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21443

BacDive-ID: 130145

DSM-Number: 29603

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Achromobacter marplatensis AU 14580 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from non-cystic fibrosis patient, sputum.

NCBI tax id

  • NCBI tax id: 470868
  • Matching level: species

strain history

@refhistory
21443<- LMG <- P. Vandamme, Univ. Ghent, Belgium <- J. J. LiPuma, Univ. Michigan, USA; LMG 26692
123264CIP <- 2014, CCUG <- 2011, LMG

doi: 10.13145/bacdive130145.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter marplatensis
  • full scientific name: Achromobacter marplatensis Gomila et al. 2011
  • synonyms

    • @ref: 20215
    • synonym: Achromobacter spiritinus

@ref: 21443

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter marplatensis

full scientific name: Achromobacter marplatensis Gomila et al. 2011 emend. Vandamme et al. 2013 emend. Vandamme et al. 2016

strain designation: AU 14580, R-46660

type strain: no

Morphology

cell morphology

  • @ref: 123264
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

@refincubation period
214431-2 days
627631 day

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21443NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
39701MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123264CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
21443positivegrowth30mesophilic
39701positivegrowth30mesophilic
62763positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62763
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
21443catalase+1.11.1.6
21443cytochrome-c oxidase+1.9.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    62763C12:00.612
    62763C14:0614
    62763C16:033.916
    62763C18:00.618
    62763C12:0 2OH313.178
    62763C14:0 3OH/C16:1 ISO I6.915.485
    62763C16:1 ω7c14.715.819
    62763C17:0 CYCLO26.416.888
    62763C18:1 ω7c /12t/9t6.817.824
    62763Unidentified1.216.298
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
62763-++--+----++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
21443+-------------++++++
62763+-------------+++++++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dateisolation date
21443non-cystic fibrosis patient, sputumUSAUSANorth America
62763Human sputum, non-cystic fibrosis patientUSAUSANorth America2007
123264Human, Sputum, non-cystic fibrosis patientUnited States of AmericaUSANorth America2007-01-02

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body Product#Fluids#Sputum

taxonmaps

  • @ref: 69479
  • File name: preview.99_954.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_9;97_9;98_570;99_954&stattab=map
  • Last taxonomy: Achromobacter
  • 16S sequence: HE613447
  • Sequence Identity:
  • Total samples: 7288
  • soil counts: 1429
  • aquatic counts: 1212
  • animal counts: 2896
  • plant counts: 1751

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
214432Risk group (German classification)
1232641Risk group (French classification)

Sequence information

16S sequences

  • @ref: 21443
  • description: Achromobacter spiritinus partial 16S rRNA gene, type strain R-46660T
  • accession: HE613447
  • length: 1508
  • database: ena
  • NCBI tax ID: 470868

External links

@ref: 21443

culture collection no.: DSM 29603, CCUG 61968, LMG 26692, CIP 110843

straininfo link

  • @ref: 88699
  • straininfo: 376319

literature

  • topic: Phylogeny
  • Pubmed-ID: 23219252
  • title: Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples.
  • authors: Vandamme P, Moore ER, Cnockaert M, De Brandt E, Svensson-Stadler L, Houf K, Spilker T, Lipuma JJ
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2012.10.003
  • year: 2012
  • mesh: Achromobacter/*classification/genetics/*isolation & purification, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, Gram-Negative Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, Multilocus Sequence Typing, Phylogeny
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21443Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29603Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29603)
39701Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34397
62763Curators of the CCUGhttps://www.ccug.se/strain?id=61968Culture Collection University of Gothenburg (CCUG) (CCUG 61968)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88699Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID376319.1
123264Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110843Collection of Institut Pasteur (CIP 110843)