Strain identifier
BacDive ID: 130145
Type strain:
Species: Achromobacter marplatensis
Strain Designation: AU 14580, R-46660
Strain history: CIP <- 2014, CCUG <- 2011, LMG
NCBI tax ID(s): 470868 (species)
General
@ref: 21443
BacDive-ID: 130145
DSM-Number: 29603
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Achromobacter marplatensis AU 14580 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from non-cystic fibrosis patient, sputum.
NCBI tax id
- NCBI tax id: 470868
- Matching level: species
strain history
@ref | history |
---|---|
21443 | <- LMG <- P. Vandamme, Univ. Ghent, Belgium <- J. J. LiPuma, Univ. Michigan, USA; LMG 26692 |
123264 | CIP <- 2014, CCUG <- 2011, LMG |
doi: 10.13145/bacdive130145.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Achromobacter
- species: Achromobacter marplatensis
- full scientific name: Achromobacter marplatensis Gomila et al. 2011
synonyms
- @ref: 20215
- synonym: Achromobacter spiritinus
@ref: 21443
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Achromobacter
species: Achromobacter marplatensis
full scientific name: Achromobacter marplatensis Gomila et al. 2011 emend. Vandamme et al. 2013 emend. Vandamme et al. 2016
strain designation: AU 14580, R-46660
type strain: no
Morphology
cell morphology
- @ref: 123264
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
colony morphology
@ref | incubation period |
---|---|
21443 | 1-2 days |
62763 | 1 day |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
21443 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
39701 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
123264 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21443 | positive | growth | 30 | mesophilic |
39701 | positive | growth | 30 | mesophilic |
62763 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 62763
- oxygen tolerance: aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | + | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
21443 | catalase | + | 1.11.1.6 |
21443 | cytochrome-c oxidase | + | 1.9.3.1 |
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 62763 C12:0 0.6 12 62763 C14:0 6 14 62763 C16:0 33.9 16 62763 C18:0 0.6 18 62763 C12:0 2OH 3 13.178 62763 C14:0 3OH/C16:1 ISO I 6.9 15.485 62763 C16:1 ω7c 14.7 15.819 62763 C17:0 CYCLO 26.4 16.888 62763 C18:1 ω7c /12t/9t 6.8 17.824 62763 Unidentified 1.2 16.298 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
62763 | - | + | + | - | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
21443 | + | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | + | + | + | |
62763 | + | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | + | + | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | sampling date | isolation date |
---|---|---|---|---|---|---|
21443 | non-cystic fibrosis patient, sputum | USA | USA | North America | ||
62763 | Human sputum, non-cystic fibrosis patient | USA | USA | North America | 2007 | |
123264 | Human, Sputum, non-cystic fibrosis patient | United States of America | USA | North America | 2007-01-02 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Patient | |
#Host Body Product | #Fluids | #Sputum |
taxonmaps
- @ref: 69479
- File name: preview.99_954.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_9;97_9;98_570;99_954&stattab=map
- Last taxonomy: Achromobacter
- 16S sequence: HE613447
- Sequence Identity:
- Total samples: 7288
- soil counts: 1429
- aquatic counts: 1212
- animal counts: 2896
- plant counts: 1751
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
21443 | 2 | Risk group (German classification) |
123264 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 21443
- description: Achromobacter spiritinus partial 16S rRNA gene, type strain R-46660T
- accession: HE613447
- length: 1508
- database: ena
- NCBI tax ID: 470868
External links
@ref: 21443
culture collection no.: DSM 29603, CCUG 61968, LMG 26692, CIP 110843
straininfo link
- @ref: 88699
- straininfo: 376319
literature
- topic: Phylogeny
- Pubmed-ID: 23219252
- title: Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples.
- authors: Vandamme P, Moore ER, Cnockaert M, De Brandt E, Svensson-Stadler L, Houf K, Spilker T, Lipuma JJ
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2012.10.003
- year: 2012
- mesh: Achromobacter/*classification/genetics/*isolation & purification, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, Gram-Negative Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, Multilocus Sequence Typing, Phylogeny
- topic2: Pathogenicity
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21443 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29603 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29603) | |
39701 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/34397 | ||
62763 | Curators of the CCUG | https://www.ccug.se/strain?id=61968 | Culture Collection University of Gothenburg (CCUG) (CCUG 61968) | |
68369 | Automatically annotated from API 20NE | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88699 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID376319.1 | |
123264 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110843 | Collection of Institut Pasteur (CIP 110843) |