Strain identifier

BacDive ID: 130142

Type strain: Yes

Species: Achromobacter animicus

Strain Designation: AU15230

Strain history: <- LMG <- P. A. van Damme, Univ. Ghent, Belgium <- J. J. LiPuma, Univ. Michigan, USA; AU15230

NCBI tax ID(s): 1389935 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 6 (current version):
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 6 (current version)

General

@ref: 21440

BacDive-ID: 130142

DSM-Number: 29601

keywords: human pathogen, mesophilic, aerobe, Bacteria, 16S sequence, genome sequence

description: Achromobacter animicus AU15230 is an aerobe, mesophilic human pathogen that was isolated from non-cystic fibrosis patient, sputum.

NCBI tax id

  • NCBI tax id: 1389935
  • Matching level: species

strain history: <- LMG <- P. A. van Damme, Univ. Ghent, Belgium <- J. J. LiPuma, Univ. Michigan, USA; AU15230

doi: 10.13145/bacdive130142.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter animicus
  • full scientific name: Achromobacter animicus Vandamme et al. 2013

@ref: 21440

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter animicus

full scientific name: Achromobacter animicus Vandamme et al. 2013

strain designation: AU15230

type strain: yes

Morphology

colony morphology

@refincubation period
214401-2 days
627611 day

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21440NUTRIENT AGAR (DSMZ Medium 1)yeshttps://bacmedia.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
39702MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
21440positivegrowth30mesophilic
39702positivegrowth30mesophilic
62761positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62761
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
21440catalase+1.11.1.6
21440cytochrome-c oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
21440+-------------++++++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling date
21440non-cystic fibrosis patient, sputumUSAUSANorth America
62761Human sputum, non-cystic fibrosis patientUSAUSANorth America2008

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body Product#Fluids#Sputum

Safety information

risk assessment

  • @ref: 21440
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21440
  • description: Achromobacter animicus partial 16S rRNA gene, type strain R-46662T
  • accession: HE613448
  • length: 1507
  • database: ena
  • NCBI tax ID: 1389935

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Achromobacter animicus LMG 26690GCA_902859585contigncbi1389935
66792Achromobacter animicus strain LMG 266901389935.3wgspatric1389935
66792Achromobacter animicus LMG 266902902242375draftimg1389935

External links

@ref: 21440

culture collection no.: DSM 29601, CCUG 61966, LMG 26690

straininfo link

@refpassport
20218http://www.straininfo.net/strains/886297
20218http://www.straininfo.net/strains/867370

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
21440Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29601Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29601)
39702Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34395
62761Curators of the CCUGhttps://www.ccug.se/strain?id=61966Culture Collection University of Gothenburg (CCUG) (CCUG 61966)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes