Strain identifier

BacDive ID: 130142

Type strain: Yes

Species: Achromobacter animicus

Strain Designation: AU15230, AU 15230, R-46662

Strain history: CIP <- 2014, CCUG <- 2011, LMG

NCBI tax ID(s): 1389935 (species)

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General

@ref: 21440

BacDive-ID: 130142

DSM-Number: 29601

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile, human pathogen

description: Achromobacter animicus AU15230 is an aerobe, mesophilic, motile human pathogen that was isolated from non-cystic fibrosis patient, sputum.

NCBI tax id

  • NCBI tax id: 1389935
  • Matching level: species

strain history

@refhistory
21440<- LMG <- P. A. van Damme, Univ. Ghent, Belgium <- J. J. LiPuma, Univ. Michigan, USA; AU15230
116395CIP <- 2014, CCUG <- 2011, LMG

doi: 10.13145/bacdive130142.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter animicus
  • full scientific name: Achromobacter animicus Vandamme et al. 2013

@ref: 21440

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter animicus

full scientific name: Achromobacter animicus Vandamme et al. 2013

strain designation: AU15230, AU 15230, R-46662

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes93.466
6948099.995negative
116395yesnegativerod-shaped

colony morphology

@refincubation period
214401-2 days
627611 day

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21440NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
39702MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116395CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
21440positivegrowth30mesophilic
39702positivegrowth30mesophilic
62761positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62761
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no98
69480no99.989

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
21440catalase+1.11.1.6
21440cytochrome-c oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
21440+-------------++++++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dateisolation date
21440non-cystic fibrosis patient, sputumUSAUSANorth America
62761Human sputum, non-cystic fibrosis patientUSAUSANorth America2008
116395Human, Sputum, non-cystic fibrosis patientUnited States of AmericaUSANorth America2008-01-02

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body Product#Fluids#Sputum

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
21440yes, in single cases1Risk group (German classification)
1163951Risk group (French classification)

Sequence information

16S sequences

  • @ref: 21440
  • description: Achromobacter animicus partial 16S rRNA gene, type strain R-46662T
  • accession: HE613448
  • length: 1507
  • database: ena
  • NCBI tax ID: 1389935

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Achromobacter animicus LMG 26690GCA_902859585contigncbi1389935
66792Achromobacter animicus strain LMG 266901389935.3wgspatric1389935
66792Achromobacter animicus LMG 266902902242375draftimg1389935

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno98no
motileyes87.299no
gram-positiveno98.519no
anaerobicno98.694yes
halophileno86.008no
spore-formingno96.049no
glucose-utilno70.759no
thermophileno99.508yes
aerobicyes91.118yes
flagellatedno69.457no
glucose-fermentno90.154no

External links

@ref: 21440

culture collection no.: DSM 29601, CCUG 61966, LMG 26690, CIP 110841

straininfo link

  • @ref: 88696
  • straininfo: 376292

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23219252Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples.Vandamme P, Moore ER, Cnockaert M, De Brandt E, Svensson-Stadler L, Houf K, Spilker T, Lipuma JJSyst Appl Microbiol10.1016/j.syapm.2012.10.0032012Achromobacter/*classification/genetics/*isolation & purification, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, Gram-Negative Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, Multilocus Sequence Typing, PhylogenyPathogenicity
Metabolism29719162Molecular and eco-physiological characterization of arsenic (As)-transforming Achromobacter sp. KAs 3-5(T) from As-contaminated groundwater of West Bengal, India.Mohapatra B, Satyanarayana T, Sar PJ Environ Sci Health A Tox Hazard Subst Environ Eng10.1080/10934529.2018.14628972018Achromobacter/*genetics/*metabolism, Arsenic/*analysis/*metabolism, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Groundwater/*chemistry/*microbiology, India, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, Sequence Analysis, DNA, Water Pollutants, Chemical/analysis/metabolismPhylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21440Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29601Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29601)
39702Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34395
62761Curators of the CCUGhttps://www.ccug.se/strain?id=61966Culture Collection University of Gothenburg (CCUG) (CCUG 61966)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88696Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID376292.1
116395Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110841Collection of Institut Pasteur (CIP 110841)