Strain identifier
BacDive ID: 130137
Type strain: 
Species: Acidithiobacillus ferrooxidans
Strain Designation: R1
Strain history: <- M. Vera, Univ. Duisburg-Essen, Germany; R1 <- W. Sand, Hamburg Univ. Technol., Germany {1988}
NCBI tax ID(s): 920 (species)
General
@ref: 21445
BacDive-ID: 130137
DSM-Number: 29444
keywords: 16S sequence, Bacteria, mesophilic
description: Acidithiobacillus ferrooxidans R1 is a mesophilic bacterium that was isolated from rock samples, Ilba mine.
NCBI tax id
- NCBI tax id: 920
- Matching level: species
strain history
- @ref: 21445
- history: <- M. Vera, Univ. Duisburg-Essen, Germany; R1 <- W. Sand, Hamburg Univ. Technol., Germany {1988}
doi: 10.13145/bacdive130137.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Acidithiobacillia
- order: Acidithiobacillales
- family: Acidithiobacillaceae
- genus: Acidithiobacillus
- species: Acidithiobacillus ferrooxidans
- full scientific name: Acidithiobacillus ferrooxidans (Temple and Colmer 1951) Kelly and Wood 2000
synonyms
- @ref: 20215
- synonym: Thiobacillus ferrooxidans
@ref: 21445
domain: Bacteria
phylum: Proteobacteria
class: Acidithiobacillia
order: Acidithiobacillales
family: Acidithiobacillaceae
genus: Acidithiobacillus
species: Acidithiobacillus ferrooxidans
full scientific name: Acidithiobacillus ferrooxidans (Temple and Colmer 1951) Kelly and Wood 2000
strain designation: R1
type strain: no
Culture and growth conditions
culture medium
- @ref: 21445
- name: LEPTOSPIRILLUM (HH) MEDIUM (DSMZ Medium 882)
- growth: yes
- link: https://mediadive.dsmz.de/medium/882
- composition: Name: LEPTOSPIRILLUM (HH) MEDIUM (DSMZ Medium 882) Composition: FeSO4 x 7 H2O 19.98 g/l CaCl2 x 2 H2O 0.146853 g/l (NH4)2SO4 0.131868 g/l MgCl2 x 6 H2O 0.0529471 g/l KH2PO4 0.0269731 g/l MnCl2 x 4 H2O 7.59241e-05 g/l ZnCl2 6.79321e-05 g/l CuCl2 x 2 H2O 6.69331e-05 g/l CoCl2 x 6 H2O 6.39361e-05 g/l H3BO3 3.0969e-05 g/l Na2MoO4 9.99001e-06 g/l H2SO4 Distilled water
culture temp
- @ref: 21445
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21445
- sample type: rock samples, Ilba mine
- country: Romania
- origin.country: ROU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Other | #Mine |
| #Environmental | #Terrestrial | #Geologic |
taxonmaps
- @ref: 69479
- File name: preview.99_1491.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_163;96_544;97_628;98_885;99_1491&stattab=map
- Last taxonomy: Acidithiobacillus
- 16S sequence: FN686787
- Sequence Identity:
- Total samples: 646
- soil counts: 127
- aquatic counts: 432
- animal counts: 60
- plant counts: 27
Safety information
risk assessment
- @ref: 21445
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21445
- description: Acidithiobacillus ferrooxidans partial 16S rRNA gene, strain R1
- accession: FN686787
- length: 1410
- database: ena
- NCBI tax ID: 1689834
External links
@ref: 21445
culture collection no.: DSM 29444
straininfo link
- @ref: 88691
- straininfo: 403407
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21445 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29444 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29444) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88691 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403407.1 |