Strain identifier

BacDive ID: 130135

Type strain: Yes

Species: Roseomonas riguiloci

Strain Designation: 03SU10-P

Strain history: C. N. Seong 03SU10-P.

NCBI tax ID(s): 940141 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 21993

BacDive-ID: 130135

DSM-Number: 29515

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped

description: Roseomonas riguiloci 03SU10-P is an aerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater.

NCBI tax id

  • NCBI tax id: 940141
  • Matching level: species

strain history

@refhistory
21993<- KCTC <- C. N. Seong, Sunchon Natl. Univ., Korea; 03SU10-P
67770C. N. Seong 03SU10-P.

doi: 10.13145/bacdive130135.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Roseomonas
  • species: Roseomonas riguiloci
  • full scientific name: Roseomonas riguiloci Baik et al. 2012
  • synonyms

    • @ref: 20215
    • synonym: Falsiroseomonas riguiloci

@ref: 21993

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Roseomonas

species: Roseomonas riguiloci

full scientific name: Roseomonas riguiloci Baik et al. 2012

strain designation: 03SU10-P

type strain: yes

Morphology

cell morphology

  • @ref: 30443
  • gram stain: negative
  • cell length: 1 µm
  • cell width: 0.6 µm
  • cell shape: ovoid-shaped
  • motility: no

colony morphology

  • @ref: 21993
  • incubation period: 2-3 days

pigmentation

  • @ref: 30443
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 21993
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21993positivegrowth25mesophilic
30443positivegrowth15-40
30443positiveoptimum27.5mesophilic
67770positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
30443positivegrowth05-11alkaliphile
30443positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30443
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30443
  • spore formation: no

halophily

  • @ref: 30443
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %

observation

  • @ref: 67770
  • observation: quinones: Q-10

metabolite utilization

  • @ref: 30443
  • Chebi-ID: 17632
  • metabolite: nitrate
  • utilization activity: +
  • kind of utilization tested: reduction

enzymes

@refvalueactivityec
21993catalase+1.11.1.6
21993cytochrome-c oxidase+1.9.3.1
30443alkaline phosphatase+3.1.3.1
30443catalase+1.11.1.6
30443cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21993freshwaterGyeongnam Province, Woopo wetlandRepublic of KoreaKORAsia
67770Freshwater from Woopo wetland in Gyeongnam ProvinceRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Freshwater

taxonmaps

  • @ref: 69479
  • File name: preview.99_104314.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_17919;97_53772;98_71050;99_104314&stattab=map
  • Last taxonomy: Roseomonas riguiloci subclade
  • 16S sequence: HQ436503
  • Sequence Identity:
  • Total samples: 1462
  • soil counts: 365
  • aquatic counts: 897
  • animal counts: 152
  • plant counts: 48

Safety information

risk assessment

  • @ref: 21993
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21993
  • description: Roseomonas riguiloci strain 03SU10-P 16S ribosomal RNA gene, partial sequence
  • accession: HQ436503
  • length: 1429
  • database: ena
  • NCBI tax ID: 940141

GC content

@refGC-contentmethod
2199368
6777068thermal denaturation, midpoint method (Tm)

External links

@ref: 21993

culture collection no.: DSM 29515, JCM 17520, KCTC 23339

straininfo link

  • @ref: 88689
  • straininfo: 406091

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22307503Roseomonas riguiloci sp. nov., isolated from wetland freshwater.Baik KS, Park SC, Choe HN, Kim SN, Moon JH, Seong CNInt J Syst Evol Microbiol10.1099/ijs.0.036186-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Fresh Water/*microbiology, Methylobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, Polyamines/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *WetlandsGenetics
Phylogeny33034554Roseomonas selenitidurans sp. nov., isolated from urban soil, and emended description of Roseomonas frigidaquae.Hou X, Liu H, Wei S, Ding Z, Sang F, Zhao Y, Dong Y, Li H, Wang Q, Zhao J, Deng H, Zhang C, Kong L, Gao YInt J Syst Evol Microbiol10.1099/ijsem.0.0044962020Bacterial Typing Techniques, Base Composition, China, Cities, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genome Size, Methylobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistryTranscriptome
Phylogeny34623235Roseomonas ponticola sp. nov., a novel bacterium isolated from Pearl River estuary.Yin LZ, Li JL, Fang BZ, Liu ZT, Wang P, Dong L, Duan L, Luo XQ, Li SH, Li WJInt J Syst Evol Microbiol10.1099/ijsem.0.0049942021Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, *Estuaries, Fatty Acids/chemistry, *Methylobacteriaceae/classification/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rivers/microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21993Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29515Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29515)
30443Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172677928776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88689Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406091.1