Strain identifier
BacDive ID: 130135
Type strain:
Species: Roseomonas riguiloci
Strain Designation: 03SU10-P
Strain history: C. N. Seong 03SU10-P.
NCBI tax ID(s): 940141 (species)
General
@ref: 21993
BacDive-ID: 130135
DSM-Number: 29515
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped
description: Roseomonas riguiloci 03SU10-P is an aerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater.
NCBI tax id
- NCBI tax id: 940141
- Matching level: species
strain history
@ref | history |
---|---|
21993 | <- KCTC <- C. N. Seong, Sunchon Natl. Univ., Korea; 03SU10-P |
67770 | C. N. Seong 03SU10-P. |
doi: 10.13145/bacdive130135.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Roseomonas
- species: Roseomonas riguiloci
- full scientific name: Roseomonas riguiloci Baik et al. 2012
synonyms
- @ref: 20215
- synonym: Falsiroseomonas riguiloci
@ref: 21993
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Roseomonas
species: Roseomonas riguiloci
full scientific name: Roseomonas riguiloci Baik et al. 2012
strain designation: 03SU10-P
type strain: yes
Morphology
cell morphology
- @ref: 30443
- gram stain: negative
- cell length: 1 µm
- cell width: 0.6 µm
- cell shape: ovoid-shaped
- motility: no
colony morphology
- @ref: 21993
- incubation period: 2-3 days
pigmentation
- @ref: 30443
- production: yes
Culture and growth conditions
culture medium
- @ref: 21993
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21993 | positive | growth | 25 | mesophilic |
30443 | positive | growth | 15-40 | |
30443 | positive | optimum | 27.5 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
30443 | positive | growth | 05-11 | alkaliphile |
30443 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 30443
- oxygen tolerance: aerobe
spore formation
- @ref: 30443
- spore formation: no
halophily
- @ref: 30443
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-1 %
observation
- @ref: 67770
- observation: quinones: Q-10
metabolite utilization
- @ref: 30443
- Chebi-ID: 17632
- metabolite: nitrate
- utilization activity: +
- kind of utilization tested: reduction
enzymes
@ref | value | activity | ec |
---|---|---|---|
21993 | catalase | + | 1.11.1.6 |
21993 | cytochrome-c oxidase | + | 1.9.3.1 |
30443 | alkaline phosphatase | + | 3.1.3.1 |
30443 | catalase | + | 1.11.1.6 |
30443 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
21993 | freshwater | Gyeongnam Province, Woopo wetland | Republic of Korea | KOR | Asia |
67770 | Freshwater from Woopo wetland in Gyeongnam Province | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Freshwater
taxonmaps
- @ref: 69479
- File name: preview.99_104314.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_17919;97_53772;98_71050;99_104314&stattab=map
- Last taxonomy: Roseomonas riguiloci subclade
- 16S sequence: HQ436503
- Sequence Identity:
- Total samples: 1462
- soil counts: 365
- aquatic counts: 897
- animal counts: 152
- plant counts: 48
Safety information
risk assessment
- @ref: 21993
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21993
- description: Roseomonas riguiloci strain 03SU10-P 16S ribosomal RNA gene, partial sequence
- accession: HQ436503
- length: 1429
- database: ena
- NCBI tax ID: 940141
GC content
@ref | GC-content | method |
---|---|---|
21993 | 68 | |
67770 | 68 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 21993
culture collection no.: DSM 29515, JCM 17520, KCTC 23339
straininfo link
- @ref: 88689
- straininfo: 406091
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 22307503 | Roseomonas riguiloci sp. nov., isolated from wetland freshwater. | Baik KS, Park SC, Choe HN, Kim SN, Moon JH, Seong CN | Int J Syst Evol Microbiol | 10.1099/ijs.0.036186-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Fresh Water/*microbiology, Methylobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, Polyamines/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Wetlands | Genetics |
Phylogeny | 33034554 | Roseomonas selenitidurans sp. nov., isolated from urban soil, and emended description of Roseomonas frigidaquae. | Hou X, Liu H, Wei S, Ding Z, Sang F, Zhao Y, Dong Y, Li H, Wang Q, Zhao J, Deng H, Zhang C, Kong L, Gao Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004496 | 2020 | Bacterial Typing Techniques, Base Composition, China, Cities, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genome Size, Methylobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 34623235 | Roseomonas ponticola sp. nov., a novel bacterium isolated from Pearl River estuary. | Yin LZ, Li JL, Fang BZ, Liu ZT, Wang P, Dong L, Duan L, Luo XQ, Li SH, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004994 | 2021 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, *Estuaries, Fatty Acids/chemistry, *Methylobacteriaceae/classification/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rivers/microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
21993 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29515 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29515) | |||
30443 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26779 | 28776041 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
88689 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406091.1 |