Strain identifier

BacDive ID: 1301

Type strain: Yes

Species: Fictibacillus rigui

Strain Designation: WPCB074

Strain history: CIP <- 2010, JCM <- 2009, C.N. Seong, Sunchon Univ., Suncheon, Korea: strain WPCB074

NCBI tax ID(s): 554308 (species)

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General

@ref: 17761

BacDive-ID: 1301

DSM-Number: 24778

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Fictibacillus rigui WPCB074 is an aerobe, spore-forming, mesophilic bacterium that was isolated from fresh water.

NCBI tax id

  • NCBI tax id: 554308
  • Matching level: species

strain history

@refhistory
17761<- JCM <- C. N. Seong, Sunchon Natl. Univ., Korea; WPCB074
67770C. N. Seong WPCB074.
67771<- CN Seong, Sunchon Natl. Univ.
122238CIP <- 2010, JCM <- 2009, C.N. Seong, Sunchon Univ., Suncheon, Korea: strain WPCB074

doi: 10.13145/bacdive1301.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Fictibacillus
  • species: Fictibacillus rigui
  • full scientific name: Fictibacillus rigui (Baik et al. 2010) Glaeser et al. 2013

  • synonyms

    • @ref: 20215
    • synonym: Bacillus rigui

@ref: 17761

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Fictibacillus

species: Fictibacillus rigui

full scientific name: Fictibacillus rigui (Baik et al. 2010) Glaeser et al. 2013

strain designation: WPCB074

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
29661positive03-06 µm0.5 µmrod-shapedyes
67771rod-shapedyes
67771positive
122238positiverod-shapedyes

pigmentation

  • @ref: 29661
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17761BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37583MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122238CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
17761positivegrowth30mesophilic
29661positivegrowth10-45
29661positiveoptimum30-37mesophilic
37583positivegrowth30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
29661positivegrowth06-09alkaliphile
29661positiveoptimum07-08

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29661aerobe
67771aerobe
122238obligate aerobe

spore formation

@refspore formationtype of spore
29661yes
67771yesendospore
122238yes

halophily

@refsaltgrowthtested relationconcentration
29661NaClpositivegrowth0-9 %
29661NaClpositiveoptimum01-02 %

observation

@refobservation
29661aggregates in chains
67770quinones: MK-7
67771quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2966123652dextrin+carbon source
2966117754glycerol+carbon source
2966153423tween 40+carbon source
2966118222xylose+carbon source
12223816301nitrite-reduction

metabolite production

  • @ref: 122238
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
29661alkaline phosphatase+3.1.3.1
29661catalase+1.11.1.6
29661cytochrome oxidase+1.9.3.1
122238oxidase+
122238catalase+1.11.1.6
122238urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17761fresh waterWoopo wetlandRepublic of KoreaKORAsia
67770Freshwater of the Woopo wetlandRepublic of KoreaKORAsia
67771From fresh waterWoopo wetlandRepublic of KoreaKORAsia
122238Environment, Fresh waterWoopo wetlandRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Freshwater

taxonmaps

  • @ref: 69479
  • File name: preview.99_52164.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1870;97_3456;98_5986;99_52164&stattab=map
  • Last taxonomy: Fictibacillus rigui
  • 16S sequence: EU939689
  • Sequence Identity:
  • Total samples: 85
  • soil counts: 41
  • aquatic counts: 15
  • animal counts: 16
  • plant counts: 13

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
177611Risk group (German classification)
1222381Risk group (French classification)

Sequence information

16S sequences

  • @ref: 17761
  • description: Bacillus rigui strain WPCB074 16S ribosomal RNA gene, partial sequence
  • accession: EU939689
  • length: 1453
  • database: ena
  • NCBI tax ID: 554308

GC content

@refGC-contentmethod
1776141.9thermal denaturation, midpoint method (Tm)
2966141.9

External links

@ref: 17761

culture collection no.: DSM 24778, CIP 110208, JCM 16348, KCTC 13278, BCRC 80434

straininfo link

  • @ref: 70952
  • straininfo: 370642

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19897614Bacillus rigui sp. nov., isolated from wetland fresh water.Baik KS, Lim CH, Park SC, Kim EM, Rhee MS, Seong CNInt J Syst Evol Microbiol10.1099/ijs.0.018184-02009Bacillus/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Fresh Water/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, WetlandsMetabolism
Phylogeny23355698Fictibacillus phosphorivorans gen. nov., sp. nov. and proposal to reclassify Bacillus arsenicus, Bacillus barbaricus, Bacillus macauensis, Bacillus nanhaiensis, Bacillus rigui, Bacillus solisalsi and Bacillus gelatini in the genus Fictibacillus.Glaeser SP, Dott W, Busse HJ, Kampfer PInt J Syst Evol Microbiol10.1099/ijs.0.049171-02013Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, Polyamines/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny24343101Fictibacillus enclensis sp. nov., isolated from marine sediment.Dastager SG, Mawlankar R, Srinivasan K, Tang SK, Lee JC, Ramana VV, Shouche YSAntonie Van Leeuwenhoek10.1007/s10482-013-0097-92013Bacillaceae/chemistry/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *SeawaterGenetics
Phylogeny35829821Fictibacillus marinisediminis sp. nov., a nitrate-reducing bacterium isolated from marine sediment in Hupo Basin, Republic of Korea.Cho ES, Hwang CY, Jung DH, Cha IT, Seo MJArch Microbiol10.1007/s00203-022-03067-62022Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/microbiology, *Nitrates, *Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17761Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24778)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24778
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29661Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2604928776041
37583Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8042
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70952Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID370642.1StrainInfo: A central database for resolving microbial strain identifiers
122238Curators of the CIPCollection of Institut Pasteur (CIP 110208)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110208