Strain identifier
BacDive ID: 13007
Type strain:
Species: Pseudomonas stutzeri
Strain Designation: MT-1
Strain history: <- J. Sikorski; MT-1 <- H. Tamegai
NCBI tax ID(s): 203192 (species), 316 (species)
General
@ref: 6747
BacDive-ID: 13007
DSM-Number: 17085
keywords: Bacteria, aerobe, mesophilic, human pathogen
description: Pseudomonas stutzeri MT-1 is an aerobe, mesophilic human pathogen that was isolated from marine mud.
NCBI tax id
NCBI tax id | Matching level |
---|---|
203192 | species |
316 | species |
strain history
- @ref: 6747
- history: <- J. Sikorski; MT-1 <- H. Tamegai
doi: 10.13145/bacdive13007.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas stutzeri
- full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)
synonyms
@ref synonym 20215 Stutzerimonas chloritidismutans 20215 Pseudomonas perfectomarinus 20215 Bacterium stutzeri 20215 Pseudomonas kunmingensis 20215 Pseudomonas chloritidismutans 20215 Stutzerimonas kunmingensis 20215 Stutzerimonas stutzeri 20215 Stutzerimonas perfectomarina 20215 Pseudomonas perfectomarina
@ref: 6747
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas stutzeri
full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946
strain designation: MT-1
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6747 | REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) | yes | https://mediadive.dsmz.de/medium/535b | Name: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water |
6747 | REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a) | yes | https://mediadive.dsmz.de/medium/220a | Name: REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a) Composition: Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6747 | positive | growth | 30 | mesophilic |
58904 | positive | growth | 30-37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 58904
- oxygen tolerance: aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | + | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | + | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | + | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 58904 C10:0 0.3 10 58904 C12:0 10.2 12 58904 C14:0 0.7 14 58904 C15:0 0.3 15 58904 C16:0 16 16 58904 C18:0 0.4 18 58904 C10:0 3OH 4 11.423 58904 C12:0 3OH 3 13.455 58904 C13:0 ISO 2OH 0.8 13.814 58904 C16:1 ω7c 31 15.819 58904 C17:0 CYCLO 0.3 16.888 58904 C17:0 iso 0.3 16.629 58904 C18:1 ω7c /12t/9t 29.8 17.824 58904 C18:1 ω9c 0.2 17.769 58904 C18:2 ω6,9c/C18:0 ANTE 0.3 17.724 58904 C19:0 CYCLO ω8c 1.8 18.9 58904 Unidentified 0.4 15.272 58904 unknown 11.798 0.2 11.798 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
58904 | - | + | + | + | - | + | + | - | + | - | + | + | - | - | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
58904 | + | - | - | - | - | - | - | - | + | + | - | + | - | + | + | + | + | + | + | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | sampling date |
---|---|---|---|---|
6747 | marine mud | Mariana Trench, 10898 m depth | International Waters | |
58904 | Marine sediment | Mariana Trench,10898 m depth | International Waters | 1996-02-01 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Terrestrial | #Mud (Sludge) |
#Environmental | #Aquatic | #Sediment |
Safety information
risk assessment
- @ref: 6747
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 6747
culture collection no.: DSM 17085, CCUG 50545
straininfo link
- @ref: 82217
- straininfo: 214540
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 17690469 | Identification of the functional periplasmic nitrate reductase (nap) gene cluster from the deep-sea denitrifier Pseudomonas sp. strain MT-1. | Tamegai H, Ikeda E, Kato C, Horikoshi K | Biosci Biotechnol Biochem | 10.1271/bbb.70256 | 2007 | *Multigene Family, Nitrate Reductase/*genetics, Nitrites/*metabolism, Open Reading Frames, Oxidation-Reduction, Periplasmic Proteins/genetics, Pseudomonas/*enzymology, Seawater/*microbiology, Sequence Homology, Nucleic Acid | Metabolism |
Enzymology | 19352028 | Physiological roles of two dissimilatory nitrate reductases in the deep-sea denitrifier Pseudomonas sp. strain MT-1. | Ikeda E, Andou S, Iwama U, Kato C, Horikoshi K, Tamegai H | Biosci Biotechnol Biochem | 10.1271/bbb.80833 | 2009 | Cell Membrane/*metabolism, Gene Expression, Nitrate Reductase/biosynthesis/chemistry/genetics/*metabolism, Nitrogen/*metabolism, Oceans and Seas, Periplasm/*enzymology, Pseudomonas/*enzymology, Pseudomonas stutzeri/enzymology, Reverse Transcriptase Polymerase Chain Reaction, Solubility | Metabolism |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
6747 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17085) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17085 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
58904 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 50545) | https://www.ccug.se/strain?id=50545 | |
68369 | Automatically annotated from API 20NE | |||
68382 | Automatically annotated from API zym | |||
82217 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID214540.1 | StrainInfo: A central database for resolving microbial strain identifiers |