version 5.0 (current version)
General
@ref: 5310
BacDive-ID: 13
DSM-Number: 14337
keywords: gram-negative, mesophilic, obligate aerobe, Bacteria, 16S sequence, genome sequence, ellipsoidal, colony-forming
description: Acetobacter malorum DSM 14337 is an obligate aerobe, mesophilic, gram-negative bacterium that forms circular colonies and was isolated from rotting apple.
strain history: <- I. Cleenwerck, LMG <- J. Swings, Univ. Ghent, Belgium
doi: 10.13145/bacdive13.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter malorum
- full scientific name: Acetobacter malorum Cleenwerck et al. 2002
@ref: 5310
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter malorum
full scientific name: Acetobacter malorum Cleenwerck et al. 2002
type strain: yes
Morphology
cell morphology
- @ref: 23233
- gram stain: negative
- cell length: 1.1-1.3 µm
- cell width: 0.9 µm
- cell shape: ellipsoidal
- motility: no
colony morphology
- @ref: 23233
- colony size: 0.5 mm
- colony color: beige
- colony shape: circular
- medium used: YPM agar
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5310 | YPM MEDIUM (DSMZ Medium 360) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium360.pdf | |
23233 | YPM agar | yes | ||
37644 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5310 | positive | growth | 28 | mesophilic |
37644 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 23233
- oxygen tolerance: obligate aerobe
spore formation
- @ref: 23233
- spore formation: no
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23233 | 16236 | ethanol | - | carbon source |
23233 | 17306 | maltose | - | carbon source |
23233 | 28938 | ammonium | - | nitrogen source |
23233 | 17790 | methanol | + | carbon source |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
23233 | 17426 | 5-dehydro-D-gluconate | no |
23233 | 16808 | 2-dehydro-D-gluconate | yes |
enzymes
- @ref: 23233
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
- @ref: 5310
- sample type: rotting apple
- geographic location: Gent
- country: Belgium
- origin.country: BEL
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Decomposing plant |
#Host Body-Site | #Plant | #Bark |
#Host Body-Site | #Plant | #Fruit (Seed) |
Safety information
risk assessment
- @ref: 5310
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Acetobacter malorum strain DSM 14337 16S ribosomal RNA gene, partial sequence | JF793957 | 1353 | ena | 178901 |
20218 | Acetobacter malorum gene for 16S rRNA, partial sequence, strain: JCM 17274 | AB665081 | 1412 | ena | 178901 |
20218 | Acetobacter malorum 16S rRNA gene, strain LMG 1746 | AJ419844 | 1442 | ena | 178901 |
20218 | Acetobacter malorum strain LMG 1746 16S ribosomal RNA gene, partial sequence | JF793956 | 1355 | ena | 178901 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acetobacter malorum LMG 1746 | GCA_001580615 | contig | ncbi | 178901 |
66792 | Acetobacter malorum DmCS_005 | GCA_000743885 | contig | ncbi | 178901 |
66792 | Acetobacter malorum CECT 7742 | GCA_001642635 | scaffold | ncbi | 178901 |
66792 | Acetobacter malorum DsW_057 | GCA_002153605 | contig | ncbi | 178901 |
66792 | Acetobacter malorum LMG 1552 | GCA_001580695 | contig | ncbi | 178901 |
66792 | Acetobacter malorum LMG 1699 | GCA_001581035 | contig | ncbi | 178901 |
66792 | Acetobacter malorum LMG 1604 | GCA_001581085 | contig | ncbi | 178901 |
66792 | Acetobacter malorum strain CECT 7742 | 178901.16 | wgs | patric | 178901 |
66792 | Acetobacter malorum strain DmCS_005 | 178901.10 | wgs | patric | 178901 |
66792 | Acetobacter malorum strain DsW_057 | 178901.17 | wgs | patric | 178901 |
66792 | Acetobacter malorum strain LMG 1552 | 178901.13 | wgs | patric | 178901 |
66792 | Acetobacter malorum strain LMG 1604 | 178901.15 | wgs | patric | 178901 |
66792 | Acetobacter malorum strain LMG 1699 | 178901.14 | wgs | patric | 178901 |
66792 | Acetobacter malorum strain LMG 1746 | 178901.12 | wgs | patric | 178901 |
GC content
- @ref: 23233
- GC-content: 57.20
- method: high performance liquid chromatography (HPLC)
External links
@ref: 5310
culture collection no.: DSM 14337, CIP 108768, LMG 1746
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/301686 |
20218 | http://www.straininfo.net/strains/690993 |
20218 | http://www.straininfo.net/strains/430 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5310 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14337) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14337 | |||
20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
23233 | I. Cleenwerck, K. Vandemeulebroecke, D. Janssens and J. Swings | 10.1099/ijs.0.02064-0 | Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov. | IJSEM 52: 1551-1558 2002 | ||
37644 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6433 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |