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Strain identifier

BacDive ID: 13

Type strain: Yes

Species: Acetobacter malorum

Strain history: LMG 1746 <-- J. Swings 76.10.

NCBI tax ID(s): 1307910 (strain), 178901 (species)

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General

@ref: 5310

BacDive-ID: 13

DSM-Number: 14337

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, ellipsoidal, colony-forming

description: Acetobacter malorum DSM 14337 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from rotting apple.

NCBI tax id

NCBI tax idMatching level
178901species
1307910strain

strain history

@refhistory
5310<- I. Cleenwerck, LMG <- J. Swings, Univ. Ghent, Belgium
67770LMG 1746 <-- J. Swings 76.10.

doi: 10.13145/bacdive13.20230509.8

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter malorum
  • full scientific name: Acetobacter malorum Cleenwerck et al. 2002

@ref: 5310

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter malorum

full scientific name: Acetobacter malorum Cleenwerck et al. 2002

type strain: yes

Morphology

cell morphology

  • @ref: 23233
  • gram stain: negative
  • cell length: 1.1-1.3 µm
  • cell width: 0.9 µm
  • cell shape: ellipsoidal
  • motility: no

colony morphology

  • @ref: 23233
  • colony size: 0.5 mm
  • colony color: beige
  • colony shape: circular
  • medium used: YPM agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5310YPM MEDIUM (DSMZ Medium 360)yeshttps://mediadive.dsmz.de/medium/360Name: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water
23233YPM agaryes
37644MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
5310positivegrowth28mesophilic
37644positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 23233
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 23233
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2323316236ethanol-carbon source
2323317306maltose-carbon source
2323328938ammonium-nitrogen source
2323317790methanol+carbon source

metabolite production

@refChebi-IDmetaboliteproduction
23233174265-dehydro-D-gluconateno
23233168082-dehydro-D-gluconateyes

enzymes

  • @ref: 23233
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5310rotting appleGentBelgiumBELEurope
67770Rotting appleGhentBelgiumBELEurope

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Decomposing plant
#Host Body-Site#Plant#Bark
#Host Body-Site#Plant#Fruit (Seed)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1214.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_827;98_961;99_1214&stattab=map
  • Last taxonomy: Acetobacter
  • 16S sequence: JF793957
  • Sequence Identity:
  • Total samples: 1514
  • soil counts: 185
  • aquatic counts: 172
  • animal counts: 932
  • plant counts: 225

Safety information

risk assessment

  • @ref: 5310
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acetobacter malorum strain DSM 14337 16S ribosomal RNA gene, partial sequenceJF7939571353ena178901
20218Acetobacter malorum gene for 16S rRNA, partial sequence, strain: JCM 17274AB6650811412ena178901
20218Acetobacter malorum 16S rRNA gene, strain LMG 1746AJ4198441442ena178901
20218Acetobacter malorum strain LMG 1746 16S ribosomal RNA gene, partial sequenceJF7939561355ena178901

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter malorum strain LMG 1746178901.12wgspatric178901
66792Acetobacter malorum LMG 17462713897233draftimg178901
67770Acetobacter malorum LMG 1746GCA_001580615contigncbi178901

GC content

@refGC-contentmethod
2323357.20high performance liquid chromatography (HPLC)
6777057.2high performance liquid chromatography (HPLC)

External links

@ref: 5310

culture collection no.: DSM 14337, CIP 108768, LMG 1746, JCM 17274, ATCC 14337, BCRC 17641, VTT E-042462

straininfo link

@refpassport
20218http://www.straininfo.net/strains/301686
20218http://www.straininfo.net/strains/690993
20218http://www.straininfo.net/strains/430

literature

  • topic: Phylogeny
  • Pubmed-ID: 12361257
  • title: Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov.
  • authors: Cleenwerck I, Vandemeulebroecke K, Janssens D, Swings J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-5-1551
  • year: 2002
  • mesh: Acetobacter/*classification/*genetics/isolation & purification/metabolism, Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, Terminology as Topic
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5310Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14337)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14337
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23233I. Cleenwerck, K. Vandemeulebroecke, D. Janssens and J. Swings10.1099/ijs.0.02064-0Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov.IJSEM 52: 1551-1558 2002
37644Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6433
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta