Strain identifier
BacDive ID: 13
Type strain:
Species: Acetobacter malorum
Strain history: LMG 1746 <-- J. Swings 76.10.
NCBI tax ID(s): 1307910 (strain), 178901 (species)
General
@ref: 5310
BacDive-ID: 13
DSM-Number: 14337
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, ellipsoidal, colony-forming
description: Acetobacter malorum DSM 14337 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from rotting apple.
NCBI tax id
NCBI tax id | Matching level |
---|---|
178901 | species |
1307910 | strain |
strain history
@ref | history |
---|---|
5310 | <- I. Cleenwerck, LMG <- J. Swings, Univ. Ghent, Belgium |
67770 | LMG 1746 <-- J. Swings 76.10. |
doi: 10.13145/bacdive13.20230509.8
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter malorum
- full scientific name: Acetobacter malorum Cleenwerck et al. 2002
@ref: 5310
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter malorum
full scientific name: Acetobacter malorum Cleenwerck et al. 2002
type strain: yes
Morphology
cell morphology
- @ref: 23233
- gram stain: negative
- cell length: 1.1-1.3 µm
- cell width: 0.9 µm
- cell shape: ellipsoidal
- motility: no
colony morphology
- @ref: 23233
- colony size: 0.5 mm
- colony color: beige
- colony shape: circular
- medium used: YPM agar
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5310 | YPM MEDIUM (DSMZ Medium 360) | yes | https://mediadive.dsmz.de/medium/360 | Name: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water |
23233 | YPM agar | yes | ||
37644 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5310 | positive | growth | 28 | mesophilic |
37644 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 23233
- oxygen tolerance: obligate aerobe
spore formation
- @ref: 23233
- spore formation: no
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23233 | 16236 | ethanol | - | carbon source |
23233 | 17306 | maltose | - | carbon source |
23233 | 28938 | ammonium | - | nitrogen source |
23233 | 17790 | methanol | + | carbon source |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
23233 | 17426 | 5-dehydro-D-gluconate | no |
23233 | 16808 | 2-dehydro-D-gluconate | yes |
enzymes
- @ref: 23233
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
5310 | rotting apple | Gent | Belgium | BEL | Europe |
67770 | Rotting apple | Ghent | Belgium | BEL | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Decomposing plant |
#Host Body-Site | #Plant | #Bark |
#Host Body-Site | #Plant | #Fruit (Seed) |
taxonmaps
- @ref: 69479
- File name: preview.99_1214.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_827;98_961;99_1214&stattab=map
- Last taxonomy: Acetobacter
- 16S sequence: JF793957
- Sequence Identity:
- Total samples: 1514
- soil counts: 185
- aquatic counts: 172
- animal counts: 932
- plant counts: 225
Safety information
risk assessment
- @ref: 5310
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Acetobacter malorum strain DSM 14337 16S ribosomal RNA gene, partial sequence | JF793957 | 1353 | ena | 178901 |
20218 | Acetobacter malorum gene for 16S rRNA, partial sequence, strain: JCM 17274 | AB665081 | 1412 | ena | 178901 |
20218 | Acetobacter malorum 16S rRNA gene, strain LMG 1746 | AJ419844 | 1442 | ena | 178901 |
20218 | Acetobacter malorum strain LMG 1746 16S ribosomal RNA gene, partial sequence | JF793956 | 1355 | ena | 178901 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acetobacter malorum strain LMG 1746 | 178901.12 | wgs | patric | 178901 |
66792 | Acetobacter malorum LMG 1746 | 2713897233 | draft | img | 178901 |
67770 | Acetobacter malorum LMG 1746 | GCA_001580615 | contig | ncbi | 178901 |
GC content
@ref | GC-content | method |
---|---|---|
23233 | 57.20 | high performance liquid chromatography (HPLC) |
67770 | 57.2 | high performance liquid chromatography (HPLC) |
External links
@ref: 5310
culture collection no.: DSM 14337, CIP 108768, LMG 1746, JCM 17274, ATCC 14337, BCRC 17641, VTT E-042462
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/301686 |
20218 | http://www.straininfo.net/strains/690993 |
20218 | http://www.straininfo.net/strains/430 |
literature
- topic: Phylogeny
- Pubmed-ID: 12361257
- title: Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov.
- authors: Cleenwerck I, Vandemeulebroecke K, Janssens D, Swings J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-52-5-1551
- year: 2002
- mesh: Acetobacter/*classification/*genetics/isolation & purification/metabolism, Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, Terminology as Topic
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5310 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14337) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14337 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
23233 | I. Cleenwerck, K. Vandemeulebroecke, D. Janssens and J. Swings | 10.1099/ijs.0.02064-0 | Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov. | IJSEM 52: 1551-1558 2002 | ||
37644 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6433 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |