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Strain identifier

BacDive ID: 12999

Type strain: No

Species: Pseudomonas stutzeri

Strain Designation: KC

Strain history: 2002, L. Sepulveda, Univ. San Juan, Puerto Rico: strain KC

NCBI tax ID(s): 203192 (species), 316 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2900

BacDive-ID: 12999

DSM-Number: 7136

keywords: genome sequence, Bacteria, aerobe, mesophilic, human pathogen

description: Pseudomonas stutzeri KC is an aerobe, mesophilic human pathogen that was isolated from aquifer cores.

NCBI tax id

NCBI tax idMatching level
203192species
316species

strain history

doi: 10.13145/bacdive12999.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas stutzeri
  • full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Stutzerimonas chloritidismutans
    20215Pseudomonas perfectomarinus
    20215Bacterium stutzeri
    20215Pseudomonas kunmingensis
    20215Pseudomonas chloritidismutans
    20215Stutzerimonas kunmingensis
    20215Stutzerimonas stutzeri
    20215Stutzerimonas perfectomarina
    20215Pseudomonas perfectomarina

@ref: 2900

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas stutzeri

full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946

strain designation: KC

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes92.793
6948099.545negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2900ALCALIGENES XYLOSOXYDANS MEDIUM WITH BENZOATE (DSMZ Medium 471)yeshttps://mediadive.dsmz.de/medium/471Name: ALCALIGENES XYLOSOXYDANS MEDIUM WITH BENZOATE (DSMZ Medium 471; with strain-specific modifications) Composition: K2HPO4 5.10978 g/l Sodium acetate 3.0 g/l KNO3 1.99601 g/l KH2PO4 1.49701 g/l Na-benzoate 0.918164 g/l NH4Cl 0.299401 g/l MgSO4 x 7 H2O 0.199601 g/l CaCl2 0.00998004 g/l EDTA 0.000998004 g/l FeSO4 x 7 H2O 0.000399202 g/l H3BO3 5.98802e-05 g/l CoCl2 x 6 H2O 3.99202e-05 g/l ZnSO4 x 7 H2O 1.99601e-05 g/l MnCl2 x 4 H2O 5.98802e-06 g/l Na2MoO4 x 2 H2O 5.98802e-06 g/l NiCl2 x 6 H2O 3.99202e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Distilled water
2900REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)yeshttps://mediadive.dsmz.de/medium/1aName: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
36141MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
2900positivegrowth30mesophilic
36141positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
2900aerobe
2900anaerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 94.058

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 94.804

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
2900+-------+--+-+++-++-+
2900+-------+--+-+++-++-+

Isolation, sampling and environmental information

isolation

  • @ref: 2900
  • sample type: aquifer cores
  • geographic location: California
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Groundwater

Safety information

risk assessment

  • @ref: 2900
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas stutzeri KCGCA_002890795contigncbi316
66792Pseudomonas stutzeri strain KC316.364wgspatric316
66792Klebsiella pneumoniae VRCO0257GCA_900173365scaffoldpatric573

External links

@ref: 2900

culture collection no.: DSM 7136

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/160563

literature

  • topic: Phylogeny
  • Pubmed-ID: 11760942
  • title: Pseudomonas sp. strain KC represents a new genomovar within Pseudomonas stutzeri.
  • authors: Sepulveda-Torres LC, Zhou J, Guasp C, Lalucat J, Knaebel D, Plank JL, Criddle CS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-51-6-2013
  • year: 2001
  • mesh: Biodegradation, Environmental, Carbon Tetrachloride/*metabolism, DNA Gyrase/genetics, DNA, Ribosomal/genetics, Fresh Water/microbiology, Inositol/metabolism, Molecular Sequence Data, Nitrites/metabolism, Nucleic Acid Hybridization, Phenotype, *Phylogeny, Polymerase Chain Reaction, Pseudomonas/*classification/*genetics/metabolism, Pyridines/chemistry/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2900Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7136)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7136
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36141Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4900
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)