Strain identifier

BacDive ID: 12999

Type strain: No

Species: Pseudomonas stutzeri

Strain Designation: KC

Strain history: CIP <- 2002, L. Sepulveda, Univ. San Juan, Puerto Rico: strain KC

NCBI tax ID(s): 203192 (species), 316 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2900

BacDive-ID: 12999

DSM-Number: 7136

keywords: genome sequence, Bacteria, aerobe, mesophilic, motile, human pathogen

description: Pseudomonas stutzeri KC is an aerobe, mesophilic, motile human pathogen that was isolated from aquifer cores.

NCBI tax id

NCBI tax idMatching level
203192species
316species

strain history

@refhistory
2900<- C.S. Criddle (Pseudomonas sp. KC)
361412002, L. Sepulveda, Univ. San Juan, Puerto Rico: strain KC
123332CIP <- 2002, L. Sepulveda, Univ. San Juan, Puerto Rico: strain KC

doi: 10.13145/bacdive12999.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas stutzeri
  • full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Stutzerimonas chloritidismutans
    20215Pseudomonas perfectomarinus
    20215Bacterium stutzeri
    20215Pseudomonas kunmingensis
    20215Pseudomonas chloritidismutans
    20215Stutzerimonas kunmingensis
    20215Stutzerimonas stutzeri
    20215Stutzerimonas perfectomarina
    20215Pseudomonas perfectomarina

@ref: 2900

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas stutzeri

full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946

strain designation: KC

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.998
6948099.997negative
123332yesnegativerod-shaped

pigmentation

  • @ref: 123332
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2900ALCALIGENES XYLOSOXYDANS MEDIUM WITH BENZOATE (DSMZ Medium 471)yeshttps://mediadive.dsmz.de/medium/471Name: ALCALIGENES XYLOSOXYDANS MEDIUM WITH BENZOATE (DSMZ Medium 471; with strain-specific modifications) Composition: K2HPO4 5.10978 g/l Sodium acetate 3.0 g/l KNO3 1.99601 g/l KH2PO4 1.49701 g/l Na-benzoate 0.918164 g/l NH4Cl 0.299401 g/l MgSO4 x 7 H2O 0.199601 g/l CaCl2 0.00998004 g/l EDTA 0.000998004 g/l FeSO4 x 7 H2O 0.000399202 g/l H3BO3 5.98802e-05 g/l CoCl2 x 6 H2O 3.99202e-05 g/l ZnSO4 x 7 H2O 1.99601e-05 g/l MnCl2 x 4 H2O 5.98802e-06 g/l Na2MoO4 x 2 H2O 5.98802e-06 g/l NiCl2 x 6 H2O 3.99202e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Distilled water
2900REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)yeshttps://mediadive.dsmz.de/medium/1aName: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
36141MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123332CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
2900positivegrowth30mesophilic
36141positivegrowth30mesophilic
123332positivegrowth5-41

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
2900aerobe
2900anaerobe
123332obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.915

halophily

@refsaltgrowthtested relationconcentration
123332NaClpositivegrowth0-6 %
123332NaClnogrowth8 %
123332NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
12333216947citrate+carbon source
1233324853esculin-hydrolysis
12333217632nitrate+reduction
12333216301nitrite+reduction
12333217632nitrate-respiration

antibiotic resistance

  • @ref: 123332
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12333235581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
123332oxidase+
123332beta-galactosidase-3.2.1.23
123332alcohol dehydrogenase-1.1.1.1
123332gelatinase-
123332amylase+
123332DNase-
123332caseinase-3.4.21.50
123332catalase+1.11.1.6
123332tween esterase+
123332lecithinase+
123332lipase-
123332lysine decarboxylase-4.1.1.18
123332ornithine decarboxylase-4.1.1.17
123332protease+
123332tryptophan deaminase-
123332urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123332-+++-+--+--+--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
2900+-------+--+-+++-++-+
2900+-------+--+-+++-++-+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123332++-------++---------------+----+++---------++----++--+++----+-+--+-------+-+++-++++-+-++++++++-+++-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
2900aquifer coresCaliforniaUSAUSANorth America
123332Aquifer cores

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Groundwater

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
2900yes, in single cases1Risk group (German classification)
1233321Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas stutzeri strain KC316.364wgspatric316
66792Stutzerimonas stutzeri KCGCA_002890795contigncbi316

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.847no
anaerobicno97.718no
halophileno86.569no
spore-formingno95.19no
glucose-utilyes93.221no
motileyes91.425no
flagellatedyes90.468no
aerobicyes91.898no
thermophileno99.77yes
glucose-fermentno91.799no

External links

@ref: 2900

culture collection no.: DSM 7136, CIP 107462, ATCC 55595

straininfo link

  • @ref: 82209
  • straininfo: 43628

literature

  • topic: Phylogeny
  • Pubmed-ID: 11760942
  • title: Pseudomonas sp. strain KC represents a new genomovar within Pseudomonas stutzeri.
  • authors: Sepulveda-Torres LC, Zhou J, Guasp C, Lalucat J, Knaebel D, Plank JL, Criddle CS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-51-6-2013
  • year: 2001
  • mesh: Biodegradation, Environmental, Carbon Tetrachloride/*metabolism, DNA Gyrase/genetics, DNA, Ribosomal/genetics, Fresh Water/microbiology, Inositol/metabolism, Molecular Sequence Data, Nitrites/metabolism, Nucleic Acid Hybridization, Phenotype, *Phylogeny, Polymerase Chain Reaction, Pseudomonas/*classification/*genetics/metabolism, Pyridines/chemistry/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
2900Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7136)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7136
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
36141Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4900
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82209Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43628.1StrainInfo: A central database for resolving microbial strain identifiers
123332Curators of the CIPCollection of Institut Pasteur (CIP 107462)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107462