Strain identifier

BacDive ID: 12998

Type strain: No

Species: Stutzerimonas decontaminans

Strain Designation: 19SMN4

Strain history: CIP <- 2002, CCUG <- J. Lalucat/R. Rossello-Mora, Palma de Mallorca, Spain: strain 19SMN4

NCBI tax ID(s): 203192 (species), 316 (species)

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General

@ref: 2443

BacDive-ID: 12998

DSM-Number: 6084

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, motile, human pathogen

description: Stutzerimonas decontaminans 19SMN4 is an obligate aerobe, mesophilic, motile human pathogen that was isolated from marine sediment; enrichment with 2-methylnaphthalene.

NCBI tax id

NCBI tax idMatching level
203192species
316species

strain history

@refhistory
2443<- R.A. Rosselló; 19SMN4
123333CIP <- 2002, CCUG <- J. Lalucat/R. Rossello-Mora, Palma de Mallorca, Spain: strain 19SMN4

doi: 10.13145/bacdive12998.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Stutzerimonas
  • species: Stutzerimonas decontaminans
  • full scientific name: Stutzerimonas decontaminans Mulet et al. 2023

@ref: 2443

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas stutzeri

full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946

strain designation: 19SMN4

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.173
6948099.999negative
123333yesnegativerod-shaped

pigmentation

  • @ref: 123333
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2443CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
39925MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123333CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
2443positivegrowth30mesophilic
39925positivegrowth30mesophilic
123333positivegrowth25-41
123333nogrowth5psychrophilic
123333nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 123333
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.966

halophily

@refsaltgrowthtested relationconcentration
123333NaClpositivegrowth0-4 %
123333NaClnogrowth6 %
123333NaClnogrowth8 %
123333NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
12333316947citrate+carbon source
1233334853esculin-hydrolysis
12333317632nitrate+reduction
12333316301nitrite+reduction
12333317632nitrate+respiration

antibiotic resistance

  • @ref: 123333
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12333335581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
123333oxidase+
123333beta-galactosidase-3.2.1.23
123333alcohol dehydrogenase-1.1.1.1
123333gelatinase-
123333amylase+
123333DNase+
123333caseinase-3.4.21.50
123333catalase+1.11.1.6
123333tween esterase+
123333lecithinase+
123333lipase+
123333lysine decarboxylase-4.1.1.18
123333ornithine decarboxylase-4.1.1.17
123333protease+
123333tryptophan deaminase-
123333urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123333-+++++-----+--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
2443+-------+----+++--++/--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123333++-------++--------------------+-----------------++--+------+------+-----+-+++-++++----+++++++-++++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
2443marine sediment; enrichment with 2-methylnaphthaleneBarcelonaSpainESPEurope
123333Environment, Marine sedimentSpainESPEurope

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
2443yes, in single cases1Risk group (German classification)
1233331Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Pseudomonas stutzeri 16S rRNA gene, partial CDS
  • accession: AJ005167
  • length: 1351
  • database: ena
  • NCBI tax ID: 316

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Stutzerimonas decontaminans 19SMN4GCA_000661915completencbi3022791
66792Pseudomonas stutzeri strain 19SMN4316.356plasmidpatric316
66792Pseudomonas stutzeri strain 19SMN4316.97completepatric316
66792Pseudomonas stutzeri 19SMN42574179801completeimg316

GC content

  • @ref: 2443
  • GC-content: 62.2

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes89.342no
flagellatedyes89.769no
gram-positiveno98.529no
anaerobicno97.39no
halophileno82.166no
spore-formingno94.894no
glucose-utilyes89.406yes
aerobicyes91.151no
thermophileno99.814yes
glucose-fermentno91.273yes

External links

@ref: 2443

culture collection no.: DSM 6084, LMG 18521, CIP 107690, CCUG 44593

straininfo link

  • @ref: 82208
  • straininfo: 12139

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2443Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6084)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6084
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39925Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5153
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82208Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID12139.1StrainInfo: A central database for resolving microbial strain identifiers
123333Curators of the CIPCollection of Institut Pasteur (CIP 107690)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107690