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Strain identifier

BacDive ID: 12998

Type strain: No

Species: Pseudomonas stutzeri

Strain Designation: 19SMN4

Strain history: <- R.A. Rosselló; 19SMN4

NCBI tax ID(s): 203192 (species), 316 (species)

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General

@ref: 2443

BacDive-ID: 12998

DSM-Number: 6084

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen

description: Pseudomonas stutzeri 19SMN4 is a mesophilic human pathogen that was isolated from marine sediment; enrichment with 2-methylnaphthalene.

NCBI tax id

NCBI tax idMatching level
203192species
316species

strain history: <- R.A. Rosselló; 19SMN4

doi: 10.13145/bacdive12998.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas stutzeri
  • full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Stutzerimonas chloritidismutans
    20215Pseudomonas perfectomarinus
    20215Bacterium stutzeri
    20215Pseudomonas kunmingensis
    20215Pseudomonas chloritidismutans
    20215Stutzerimonas kunmingensis
    20215Stutzerimonas stutzeri
    20215Stutzerimonas perfectomarina
    20215Pseudomonas perfectomarina

@ref: 2443

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas stutzeri

full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946

strain designation: 19SMN4

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes93.772
6948099.542negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2443CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
39925MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
2443positivegrowth30mesophilic
39925positivegrowth30mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 96.377

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 93.471

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
2443+-------+----+++--++/--

Isolation, sampling and environmental information

isolation

  • @ref: 2443
  • sample type: marine sediment; enrichment with 2-methylnaphthalene
  • geographic location: Barcelona
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 2443
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Pseudomonas stutzeri 16S rRNA gene, partial CDS
  • accession: AJ005167
  • length: 1351
  • database: ena
  • NCBI tax ID: 316

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas stutzeri 19SMN4GCA_000661915completencbi316
66792Pseudomonas stutzeri strain 19SMN4316.356plasmidpatric316
66792Pseudomonas stutzeri strain 19SMN4316.97completepatric316
66792Pseudomonas stutzeri 19SMN42574179801completeimg316
66792Streptococcus pneumoniae SMRU2057GCA_001344155scaffoldpatric1313
66792Pseudomonas aeruginosa XDR-PAGCA_900707095contigpatric287

GC content

  • @ref: 2443
  • GC-content: 62.2

External links

@ref: 2443

culture collection no.: DSM 6084, LMG 18521

straininfo link

@refpassport
20218http://www.straininfo.net/strains/46110
20218http://www.straininfo.net/strains/46108

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2443Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6084)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6084
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39925Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5153
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)