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Strain identifier

BacDive ID: 12997

Type strain: No

Species: Pseudomonas stutzeri

Strain Designation: DNSP21

Strain history: <- R.A. Rosselló; DNSP21

NCBI tax ID(s): 203192 (species), 316 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2441

BacDive-ID: 12997

DSM-Number: 6082

keywords: genome sequence, Bacteria, mesophilic, human pathogen

description: Pseudomonas stutzeri DNSP21 is a mesophilic human pathogen that was isolated from sewage water.

NCBI tax id

NCBI tax idMatching level
203192species
316species

strain history: <- R.A. Rosselló; DNSP21

doi: 10.13145/bacdive12997.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas stutzeri
  • full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Stutzerimonas chloritidismutans
    20215Pseudomonas perfectomarinus
    20215Bacterium stutzeri
    20215Pseudomonas kunmingensis
    20215Pseudomonas chloritidismutans
    20215Stutzerimonas kunmingensis
    20215Stutzerimonas stutzeri
    20215Stutzerimonas perfectomarina
    20215Pseudomonas perfectomarina

@ref: 2441

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas stutzeri

full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946

strain designation: DNSP21

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes91.853
6948099.834negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2441REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a)yeshttps://mediadive.dsmz.de/medium/220aName: REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a) Composition: Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
39926MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
2441positivegrowth30mesophilic
39926positivegrowth30mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.221

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 90.517

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
2441+-------+----+++-++-+

Isolation, sampling and environmental information

isolation

  • @ref: 2441
  • sample type: sewage water
  • geographic location: Mallorca, Santa Ponca
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Waste
  • Cat3: #Wastewater

Safety information

risk assessment

  • @ref: 2441
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas stutzeri DNSP21GCA_002890935contigncbi316
66792Pseudomonas stutzeri strain DNSP21316.370wgspatric316
66792Pseudomonas stutzeri strain FDAARGOS_877 strain Not applicable316.577completepatric316
66792Acinetobacter baumannii 1064293_45 1064293_45GCA_000584695contigpatric1310750
66792Staphylococcus aureus BJ-PNB40GCA_011291735contigpatric1280

GC content

  • @ref: 2441
  • GC-content: 63.4

External links

@ref: 2441

culture collection no.: DSM 6082, LMG 18520

straininfo link

@refpassport
20218http://www.straininfo.net/strains/46106
20218http://www.straininfo.net/strains/46104

literature

  • topic: Metabolism
  • Pubmed-ID: 17473886
  • title: Identification of siderophores of Pseudomonas stutzeri.
  • authors: Zawadzka AM, Vandecasteele FP, Crawford RL, Paszczynski AJ
  • journal: Can J Microbiol
  • DOI: 10.1139/w06-077
  • year: 2006
  • mesh: Bacterial Outer Membrane Proteins/genetics/metabolism, Chromatography, High Pressure Liquid, Deferoxamine/chemistry/metabolism, Ferric Compounds/chemistry/metabolism, Gas Chromatography-Mass Spectrometry, Molecular Structure, Oligopeptides/chemistry/metabolism, Pseudomonas stutzeri/classification/genetics/*metabolism, Receptors, Cell Surface/genetics/metabolism, Siderophores/chemistry/*metabolism, Spectrometry, Mass, Electrospray Ionization, Tandem Mass Spectrometry
  • topic2: Proteome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2441Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6082)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6082
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39926Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5154
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)