Strain identifier

BacDive ID: 12996

Type strain: Yes

Species: Pseudomonas stutzeri

Strain Designation: 221, AB 201

Strain history: CIP <- 1987, NCIB <- ATCC <- R.Y. Stanier, Inst. Pasteur, Paris, France: strain 221 <- H. Lautrop : strain AB 201

NCBI tax ID(s): 96563 (strain), 203192 (species), 316 (species)

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General

@ref: 1954

BacDive-ID: 12996

DSM-Number: 5190

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, motile, human pathogen

description: Pseudomonas stutzeri 221 is an obligate aerobe, mesophilic, motile human pathogen that was isolated from spinal fluid.

NCBI tax id

NCBI tax idMatching level
96563strain
203192species
316species

strain history

@refhistory
1954<- ATCC <- R.Y. Stanier; 221 <- H. Lautrop; AB201
67770Y. Kosako 85006 <-- Nissui Pharm.Co., Ltd. <-- ATCC 17588 <-- R. Y. Stanier 220 <-- H. Lautrop AB 180.
123339CIP <- 1987, NCIB <- ATCC <- R.Y. Stanier, Inst. Pasteur, Paris, France: strain 221 <- H. Lautrop : strain AB 201

doi: 10.13145/bacdive12996.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas stutzeri
  • full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Stutzerimonas chloritidismutans
    20215Pseudomonas perfectomarinus
    20215Bacterium stutzeri
    20215Pseudomonas kunmingensis
    20215Pseudomonas chloritidismutans
    20215Stutzerimonas kunmingensis
    20215Stutzerimonas stutzeri
    20215Stutzerimonas perfectomarina
    20215Pseudomonas perfectomarina

@ref: 1954

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas stutzeri

full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946

strain designation: 221, AB 201

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.402
6948099.999negative
123339yesnegativerod-shaped

pigmentation

  • @ref: 123339
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1954REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)yeshttps://mediadive.dsmz.de/medium/1aName: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
40511MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123339CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
1954positivegrowth37mesophilic
40511positivegrowth30mesophilic
67770positivegrowth37mesophilic
123339positivegrowth25-41
123339nogrowth5psychrophilic
123339nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 123339
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.987

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
68369malate+assimilation25115
68369adipate-assimilation17128
68369decanoate+assimilation27689
68369gluconate+assimilation24265
68369maltose+assimilation17306
68369N-acetylglucosamine-assimilation59640
68369D-mannose-assimilation16024
68369L-arabinose-assimilation30849
68369D-glucose+assimilation17634
68369gelatin-hydrolysis5291
68369esculin-hydrolysis4853
68369urea-hydrolysis16199
68369arginine-hydrolysis29016
68369D-glucose-fermentation17634
68369tryptophan-energy source27897
68369nitrate+reduction17632
123339citrate+carbon source16947
123339esculin-hydrolysis4853
123339nitrate+reduction17632
123339nitrite+reduction16301
123339phenol-degradation15882
123339nitrate+respiration17632

antibiotic resistance

  • @ref: 123339
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12333935581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
123339oxidase+
123339beta-galactosidase-3.2.1.23
123339alcohol dehydrogenase-1.1.1.1
123339gelatinase-
123339amylase+
123339DNase-
123339caseinase-3.4.21.50
123339catalase+1.11.1.6
123339lecithinase+
123339lipase+
123339lysine decarboxylase-4.1.1.18
123339ornithine decarboxylase-4.1.1.17
123339protease-
123339tryptophan deaminase-
123339urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123339-++++++-+-++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
1954+-------+--+-+++-++-+
45406+-------+----+++-++-+
1954+-------+--+-+++-++-+
1954+-------+----+++-++-+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123339-------------------------------------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123339++-------++--------------------+-+---------------++--+------+--------------+++-++++----++--+++-++--

Isolation, sampling and environmental information

isolation

@refsample type
1954spinal fluid
45406Spinal fluid
67770Bile
123339Human, Spinal fluid

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Fluids
  • Cat3: #Cerebrospinal fluid

taxonmaps

  • @ref: 69479
  • File name: preview.99_169.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_64;98_148;99_169&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: U26262
  • Sequence Identity:
  • Total samples: 10041
  • soil counts: 1871
  • aquatic counts: 2988
  • animal counts: 4693
  • plant counts: 489

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
1954yes, in single cases1Risk group (German classification)
1233391Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pseudomonas sp. 221 16S ribosomal RNA gene, partial sequenceEU244807114ena480846
20218Pseudomonas stutzeri ATCC 17588 = LMG 11199 16S ribosomal RNA gene, partial sequenceAF0947481458ena96563
20218Pseudomonas stutzeri partial 16S rRNA gene, type strain ICMP 12561TAJ3083151352ena96563
20218Pseudomonas stutzeri CCUG 11256 16S ribosomal RNA gene, complete sequenceU262621456ena316
20218Pseudomonas stutzeri partial 16S rRNA gene, strain DSM 5190TAJ2881511369ena316
20218Pseudomonas stutzeri 16S rRNA geneD840241342ena316
20218Pseudomonas stutzeri gene for 16S rRNA, partial sequence, strain: NBRC 14165AB6805731462ena316
20218Pseudomonas stutzeri strain VKM B-975 16S ribosomal RNA gene, partial sequenceEU8836631495ena316

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Stutzerimonas stutzeri CGMCC 1.1803GCA_000219605completencbi316
66792Pseudomonas stutzeri ATCC 17588 = LMG 1119996563.16wgspatric96563
66792Pseudomonas stutzeri ATCC 17588 = LMG 1119996563.4completepatric96563
66792Pseudomonas stutzeri strain FDAARGOS_875316.576completepatric316
66792Pseudomonas stutzeri strain PSEUDT2.31D-1316.572wgspatric316
66792Pseudomonas stutzeri strain PSEUDT2PLASMID316.571completepatric316
66792Pseudomonas stutzeri CGMCC 1.1803650716077completeimg96563
66792Pseudomonas stutzeri DSM 51902582581522draftimg316
67770Stutzerimonas stutzeri ATCC 17588 = LMG 11199GCA_004359495contigncbi96563

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes89.972no
flagellatedyes88.732no
gram-positiveno98.907no
anaerobicno97.899no
halophileno81.322no
spore-formingno95.252no
thermophileno99.705yes
glucose-utilyes91.074no
aerobicyes92.217no
glucose-fermentno91.733yes

External links

@ref: 1954

culture collection no.: DSM 5190, ATCC 17588, NCIB 11358, NCPPB 1973, CCUG 11256, LMG 2333, CCM 4557, JCM 5965, CECT 930, CGMCC 1.1803, CIP 103022, IAM 12668, IFO 14165, LMG 11199, NBRC 14165, NCIMB 11358, NCTC 12262, VKM B-975

straininfo link

  • @ref: 82206
  • straininfo: 4592

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics1327105Investigation of the solution conformation of cytochrome c-551 from Pseudomonas stutzeri.Cai M, Bradford EG, Timkovich RBiochemistry10.1021/bi00151a0301992Amino Acid Sequence, *Bacterial Proteins, Cytochrome c Group/*chemistry, Ferrous Compounds/chemistry, Heme/chemistry, Hydrogen Bonding, Magnetic Resonance Spectroscopy, Models, Molecular, Molecular Sequence Data, Protein Conformation, Protons, Pseudomonas/*chemistry, Sequence Homology
Enzymology1369188High-frequency electroporation and maintenance of pUC- and pBR-based cloning vectors in Pseudomonas stutzeri.Pemberton JM, Penfold RJCurr Microbiol10.1007/BF015700781992*Bacteriocin Plasmids, *Bacteriological Techniques, Carotenoids/biosynthesis, Cloning, Molecular/*methods, DNA, Bacterial/*genetics, *Electrochemistry, *Genetic Vectors, Pseudomonas/*genetics, Replicon, *Transformation, Bacterial
Phylogeny857349616S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov.Bennasar A, Rossello-Mora R, Lalucat J, Moore ERInt J Syst Bacteriol10.1099/00207713-46-1-2001996Base Sequence, DNA, Bacterial/genetics, Molecular Sequence Data, Nucleic Acid Conformation, Phylogeny, Pseudomonas/*classification/genetics, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/*geneticsGenetics
Phylogeny8995815Genome organization of Pseudomonas stutzeri and resulting taxonomic and evolutionary considerations.Ginard M, Lalucat J, Tummler B, Romling UInt J Syst Bacteriol10.1099/00207713-47-1-1321997Blotting, Southern, Chromosome Mapping, Chromosomes/genetics, DNA, Bacterial/analysis, Electrophoresis, Gel, Pulsed-Field, Genes, Bacterial, *Genome, Bacterial, Nucleic Acid Hybridization, Operon/genetics, Plasmids, Polymorphism, Restriction Fragment Length, Pseudomonas/*classification/*genetics, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, *Restriction MappingEnzymology
Metabolism9403102Pyrimidine biosynthesis in Pseudomonas stutzeri ATCC 17588.West TPAntonie Van Leeuwenhoek10.1023/a:10003992191441997Aspartate Carbamoyltransferase/deficiency/genetics/metabolism, Bacterial Proteins/genetics/metabolism, Culture Media/pharmacology, Cytosine/biosynthesis, Dihydroorotase/metabolism, Dihydroorotate Dehydrogenase, Glucose/pharmacology, Orotate Phosphoribosyltransferase/metabolism, Orotidine-5'-Phosphate Decarboxylase/metabolism, Oxidoreductases/metabolism, *Oxidoreductases Acting on CH-CH Group Donors, Pseudomonas/drug effects/enzymology/*metabolism, Pyrimidines/*biosynthesis, Species Specificity, Succinic Acid/pharmacology, Uracil/biosynthesisEnzymology
Phylogeny10390872The rice inoculant strain Alcaligenes faecalis A15 is a nitrogen-fixing Pseudomonas stutzeri.Vermeiren H, Willems A, Schoofs G, de Mot R, Keijers V, Hai W, Vanderleyden JSyst Appl Microbiol10.1016/S0723-2020(99)80068-X1999Alcaligenes/*classification/genetics, Base Sequence, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Genes, Bacterial/genetics, Molecular Sequence Data, Nitrogen Fixation/genetics, Nucleic Acid Hybridization, Open Reading Frames/genetics, Oryza/microbiology, Phenotype, Phylogeny, Pseudomonas/chemistry/*classification/genetics, RNA, Ribosomal, 16S/analysisGenetics
Phylogeny12508887Pseudomonas chloritidismutans sp. nov., a non-denitrifying, chlorate-reducing bacterium.Wolterink AFWM, Jonker AB, Kengen SWM, Stams AJMInt J Syst Evol Microbiol10.1099/00207713-52-6-21832002Bioreactors, Chlorates/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Microscopy, Electron, Molecular Sequence Data, Oxidation-Reduction, Phenotype, Phylogeny, Pseudomonas/*classification/genetics/isolation & purification/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species SpecificityMetabolism
Metabolism12774178Anaerobic oxidation of 2-chloroethanol under denitrifying conditions by Pseudomonas stutzeri strain JJ.Dijk JA, Stams AJ, Schraa G, Ballerstedt H, de Bont JA, Gerritse JAppl Microbiol Biotechnol10.1007/s00253-003-1346-z2003Anaerobiosis, Base Sequence, DNA, Bacterial/chemistry/genetics, Ethylene Chlorohydrin/*metabolism, Molecular Sequence Data, Nitrates/*metabolism, Oxidation-Reduction, Polymerase Chain Reaction, Pseudomonas stutzeri/genetics/*metabolism, RNA, Ribosomal, 16S/chemistry/geneticsGenetics
16233587Denitrification activity of the bacterium Pseudomonas sp. ASM-2-3 isolated from the Ariake Sea tideland.Kariminiaae-Hamedaani HR, Kanda K, Kato FJ Biosci Bioeng10.1016/S1389-1723(04)70163-22004
Metabolism16871797[Mechanism of cyanide and thiocyanate decomposition by an association of Pseudomonas putida and Pseudomonas stutzeri strains].Grigor'eva NV, Kondrat'eva TF, Krasil'nikova EN, Karavaiko GIMikrobiologiia2006Ammonia/metabolism, Biodegradation, Environmental, Carbon-Nitrogen Lyases/metabolism, Chemical Industry, Cyanates/metabolism, Cyanides/*metabolism, Pseudomonas putida/*metabolism, Pseudomonas stutzeri/*metabolism, Soil Microbiology, Soil Pollutants, Species Specificity, Thiocyanates/*metabolismPhylogeny
Phylogeny19436124Cultivation characteristics of denitrification by thermophilic Geobacillus sp. strain TDN01.Mishima M, Iwata K, Nara K, Matsui T, Shigeno T, Omori TJ Gen Appl Microbiol10.2323/jgam.55.812009Bacillaceae/*classification/genetics/isolation & purification/*metabolism, Bacterial Typing Techniques, DNA, Bacterial/genetics, *Hot Temperature, Nitrates/*metabolism, Nitrous Oxide/metabolism, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Time FactorsMetabolism
Metabolism21169432Natural and engineered hydroxyectoine production based on the Pseudomonas stutzeri ectABCD-ask gene cluster.Seip B, Galinski EA, Kurz MAppl Environ Microbiol10.1128/AEM.02124-102010Amino Acids, Diamino/*biosynthesis/*genetics, Betaine/metabolism/pharmacology, Escherichia coli/*genetics/metabolism, Gene Expression Regulation, Bacterial, *Genes, Bacterial, *Industrial Microbiology, Molecular Sequence Data, Multigene Family, Polymerase Chain Reaction, Promoter Regions, Genetic, Pseudomonas stutzeri/*genetics/*metabolism, Salinity, Trehalose/metabolismBiotechnology
Genetics21994926Complete genome sequence of the type strain Pseudomonas stutzeri CGMCC 1.1803.Chen M, Yan Y, Zhang W, Lu W, Wang J, Ping S, Lin MJ Bacteriol10.1128/JB.06061-112011Chemotaxis, Chromosomes, Bacterial, DNA, Bacterial/*chemistry/*genetics, DNA, Circular/chemistry/genetics, Genes, Bacterial, *Genome, Bacterial, Metabolic Networks and Pathways/genetics, Molecular Sequence Data, Open Reading Frames, Pseudomonas stutzeri/*genetics/metabolism/physiology, Sequence Analysis, DNATranscriptome
Metabolism22055314Assessment of a process to degrade metal working fluids using Pseudomonas stutzeri CECT 930 and indigenous microbial consortia.Moscoso F, Deive FJ, Villar P, Pena R, Herrero L, Longo MA, Sanroman MAChemosphere10.1016/j.chemosphere.2011.10.0122011Biodegradation, Environmental, Metallurgy, Metals/analysis/*metabolism, Microbial Consortia/*physiology, Pseudomonas stutzeri/*metabolism, Water Pollutants, Chemical/analysis/*metabolism
Metabolism22074903Technoeconomic assessment of phenanthrene degradation by Pseudomonas stutzeri CECT 930 in a batch bioreactor.Moscoso F, Deive FJ, Longo MA, Sanroman MABioresour Technol10.1016/j.biortech.2011.10.0532011Batch Cell Culture Techniques/*economics/*instrumentation, Biodegradation, Environmental, Bioreactors/*economics/microbiology, Computer Simulation, Models, Biological, *Models, Economic, Phenanthrenes/*economics/*metabolism, Pseudomonas stutzeri/*metabolism, Spain
Phylogeny24225026Pseudomonas kunmingensis sp. nov., an exopolysaccharide-producing bacterium isolated from a phosphate mine.Xie F, Ma H, Quan S, Liu D, Chen G, Chao Y, Qian SInt J Syst Evol Microbiol10.1099/ijs.0.055632-02013Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Mining, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphates, *Phylogeny, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryGenetics
Phylogeny25139301Monitoring of oil pollution at Gemsa Bay and bioremediation capacity of bacterial isolates with biosurfactants and nanoparticles.El-Sheshtawy HS, Khalil NM, Ahmed W, Abdallah RIMar Pollut Bull10.1016/j.marpolbul.2014.07.0592014Bays/*chemistry, *Biodegradation, Environmental, Ecosystem, Egypt, Indian Ocean, Petroleum/*analysis, Petroleum Pollution/*analysis, RNA, Ribosomal, 16S/genetics
Phylogeny25550067Pseudomonas songnenensis sp. nov., isolated from saline and alkaline soils in Songnen Plain, China.Zhang L, Pan Y, Wang K, Zhang X, Zhang S, Fu X, Zhang C, Jiang JAntonie Van Leeuwenhoek10.1007/s10482-014-0365-32014Aerobiosis, Alkalies, Bacterial Typing Techniques, China, Cluster Analysis, Cytosol/chemistry, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Fatty Acids/analysis, Flagella/physiology, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Pigments, Biological/metabolism, Pseudomonas/*classification/genetics/*isolation & purification/physiology, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Sigma Factor/genetics, Soil/chemistry, *Soil MicrobiologyGenetics
Phylogeny25574037Pseudomonas zhaodongensis sp. nov., isolated from saline and alkaline soils.Zhang L, Pan Y, Wang K, Zhang X, Zhang C, Zhang S, Fu X, Jiang JInt J Syst Evol Microbiol10.1099/ijs.0.0000572015Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Soil/chemistry, *Soil Microbiology, Ubiquinone/chemistryGenetics
Metabolism33305820Temperature and oxygen level determine N2 O respiration activities of heterotrophic N2 O-reducing bacteria: Biokinetic study.Zhou Y, Suenaga T, Qi C, Riya S, Hosomi M, Terada ABiotechnol Bioeng10.1002/bit.276542020Nitrous Oxide/*metabolism, Paracoccus denitrificans/*metabolism, Pseudomonas stutzeri/*metabolism, Rhodocyclaceae/*metabolism, *Temperature
Phylogeny33587227Pseudomonas lopnurensis sp. nov., an endophytic bacterium isolated from Populus euphratica at the ancient Ugan river.Mamtimin T, Anwar N, Abdurahman M, Kurban M, Rozahon M, Mamtimin H, Hamood B, Rahman E, Wu MAntonie Van Leeuwenhoek10.1007/s10482-021-01524-82021Bacterial Typing Techniques, DNA, Bacterial/genetics, Phospholipids/analysis, Phylogeny, *Populus, Pseudomonas/genetics, RNA, Ribosomal, 16S/genetics, Rivers, Sequence Analysis, DNATranscriptome
Phylogeny35567652Pseudomonas phenolilytica sp. nov., a novel phenol-degrading bacterium.Kujur RRA, Das SKArch Microbiol10.1007/s00203-022-02912-y2022Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phenol, Phylogeny, *Pseudomonas, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Transcriptome35917165Exploring the Functions of Efficient Canonical Denitrifying Bacteria as N(2)O Sinks: Implications from (15)N Tracer and Transcriptome Analyses.Oba K, Suenaga T, Kuroiwa M, Riya S, Terada AEnviron Sci Technol10.1021/acs.est.2c021192022Bacteria, Denitrification, Gene Expression Profiling, Nitrites, *Nitrogen Dioxide, *Nitrous Oxide
Phylogeny36131209Pseudomonas marianensis sp. nov., a marine bacterium isolated from deep-sea sediments of the Mariana Trench.Yang Y, Gao Y, Liu Y, Liu B, Wang D, Xu Y, Wei YArch Microbiol10.1007/s00203-022-03250-92022Ancitabine, Bacterial Typing Techniques, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Glycolipids/chemistry, Nucleotides, Phosphatidylcholines, *Phosphatidylethanolamines, Phosphatidylglycerols, Phospholipids/analysis, Phylogeny, Pseudomonas, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride, Ubiquinone/chemistryTranscriptome

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40511Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14773
45406Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 11256)https://www.ccug.se/strain?id=11256
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
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123339Curators of the CIPCollection of Institut Pasteur (CIP 103022)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103022