Strain identifier
BacDive ID: 12994
Type strain: 
Species: Pseudomonas sp.
Strain Designation: G62
Strain history: <- J. T. van Dongen, Max Planck Inst. Molecular Plant Physiology, Golm, Germany; G62 <- S. Karojet and S. Kunz, MPI Golm
NCBI tax ID(s): 306 (species)
version 8.1 (current version)
General
@ref: 18120
BacDive-ID: 12994
DSM-Number: 25842
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudomonas sp. G62 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Gol-1.
NCBI tax id
- NCBI tax id: 306
- Matching level: species
strain history
- @ref: 18120
- history: <- J. T. van Dongen, Max Planck Inst. Molecular Plant Physiology, Golm, Germany; G62 <- S. Karojet and S. Kunz, MPI Golm
doi: 10.13145/bacdive12994.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas sp.
- full scientific name: Pseudomonas Migula 1894 (Approved Lists 1980)
synonyms
@ref synonym 20215 Serpens 20215 Flavimonas 20215 Stutzerimonas
@ref: 18120
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas sp.
full scientific name: Pseudomonas sp.
strain designation: G62
type strain: no
Culture and growth conditions
culture medium
- @ref: 18120
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 18120
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
compound production
| @ref | compound |
|---|---|
| 18120 | ACC deaminase |
| 18120 | auxin |
| 18120 | siderophore |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | + | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | + | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | + | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | + | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | + | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | + | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18120 | - | - | - | + | - | - | + | - | + | + | + | + | + | - | + | + | - | + | + | - | + |
| 18120 | - | - | - | + | - | - | + | - | + | + | + | + | + | - | + | + | - | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 18120
- sample type: roots of Arabidopsis thaliana ecotype Gol-1
- host species: Arabidopsis thaliana
- geographic location: Golm
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
taxonmaps
- @ref: 69479
- File name: preview.99_444.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_98;99_444&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: FN547413
- Sequence Identity:
- Total samples: 636
- soil counts: 197
- aquatic counts: 124
- animal counts: 162
- plant counts: 153
Sequence information
16S sequences
- @ref: 18120
- description: Pseudomonas sp. G62 partial 16S rRNA gene, strain G62
- accession: FN547413
- length: 1470
- database: ena
- NCBI tax ID: 671623
External links
@ref: 18120
culture collection no.: DSM 25842
straininfo link
- @ref: 82204
- straininfo: 401180
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18120 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25842) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25842 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 68369 | Automatically annotated from API 20NE | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 82204 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401180.1 | StrainInfo: A central database for resolving microbial strain identifiers |