Strain identifier

BacDive ID: 12993

Type strain: No

Species: Pseudomonas sp.

Strain Designation: ID 09-296, G53

Strain history: <- J. T. van Dongen, Max Planck Inst. Molecular Plant Physiology, Golm, Germany; G53 <- S. Karojet and S. Kunz; MPI Golm

NCBI tax ID(s): 306 (species)

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General

@ref: 18118

BacDive-ID: 12993

DSM-Number: 25830

keywords: 16S sequence, Bacteria, mesophilic

description: Pseudomonas sp. ID 09-296 is a mesophilic bacterium that was isolated from roots of field-grown Arabidopsis thaliana ecotype Gol-1.

NCBI tax id

  • NCBI tax id: 306
  • Matching level: species

strain history

  • @ref: 18118
  • history: <- J. T. van Dongen, Max Planck Inst. Molecular Plant Physiology, Golm, Germany; G53 <- S. Karojet and S. Kunz; MPI Golm

doi: 10.13145/bacdive12993.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas sp.
  • full scientific name: Pseudomonas Migula 1894 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Flavimonas
    20215Serpens
    20215Chryseomonas
    20215Zestomonas
    20215Phytopseudomonas
    20215Caenipseudomonas
    20215Aquipseudomonas
    20215Ectopseudomonas
    20215Metapseudomonas
    20215Geopseudomonas

@ref: 18118

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas sp.

full scientific name: Pseudomonas sp.

strain designation: ID 09-296, G53

type strain: no

Morphology

multimedia

  • @ref: 18118
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25830.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 18118
  • name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1a
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 18118
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

compound production

  • @ref: 18118
  • compound: indole-3-acetic acid

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369cytochrome oxidase+1.9.3.1
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
18118---+----+-+/----++-++-+

Isolation, sampling and environmental information

isolation

  • @ref: 18118
  • sample type: roots of field-grown Arabidopsis thaliana ecotype Gol-1
  • host species: Arabidopsis thaliana
  • geographic location: Golm
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)

taxonmaps

  • @ref: 69479
  • File name: preview.99_239.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_203;99_239&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: FN547409
  • Sequence Identity:
  • Total samples: 2133
  • soil counts: 368
  • aquatic counts: 543
  • animal counts: 799
  • plant counts: 423

Sequence information

16S sequences

  • @ref: 18118
  • description: Pseudomonas sp. G53 partial 16S rRNA gene, strain G53
  • accession: FN547409
  • length: 1464
  • database: nuccore
  • NCBI tax ID: 671619

External links

@ref: 18118

culture collection no.: DSM 25830

straininfo link

  • @ref: 82203
  • straininfo: 398539

Reference

@idauthorscataloguedoi/urltitle
18118Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25830)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25830
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82203Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID398539.1StrainInfo: A central database for resolving microbial strain identifiers