Strain identifier

BacDive ID: 1299

Type strain: Yes

Species: Bacillus chungangensis

Strain history: <- WY Kim, Chung-Ang Univ., Korea

NCBI tax ID(s): 587633 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17394

BacDive-ID: 1299

DSM-Number: 23837

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Bacillus chungangensis DSM 23837 is an aerobe, spore-forming, mesophilic bacterium that was isolated from sea sand.

NCBI tax id

  • NCBI tax id: 587633
  • Matching level: species

strain history

@refhistory
17394<- CCUG <- W. Kim, Chung-Ang Univ., Seoul, Republic of Korea
67771<- WY Kim, Chung-Ang Univ., Korea

doi: 10.13145/bacdive1299.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus chungangensis
  • full scientific name: Bacillus chungangensis Cho et al. 2010

@ref: 17394

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Bacillus

species: Bacillus chungangensis

full scientific name: Bacillus chungangensis Cho et al. 2010

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
29464positive2.5 µm0.8 µmrod-shapedyes
67771rod-shapedyes
67771positive

colony morphology

  • @ref: 61490
  • incubation period: 1 day

Culture and growth conditions

culture medium

  • @ref: 17394
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17394positivegrowth30mesophilic
29464positivegrowth04-45
29464positiveoptimum30mesophilic
61490positivegrowth37mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
29464positivegrowth4.5-9alkaliphile
29464positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29464aerobe
67771aerobe

spore formation

@refspore formationtype of spore
29464yes
67771yesspore

halophily

@refsaltgrowthtested relationconcentration
29464NaClpositivegrowth0-15 %
29464NaClpositiveoptimum5 %

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2946428757fructose+carbon source
2946417234glucose+carbon source
2946426546rhamnose+carbon source
2946433942ribose+carbon source
2946417814salicin+carbon source
2946417992sucrose+carbon source

enzymes

@refvalueactivityec
29464catalase+1.11.1.6
29464cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
17394sea sandJeju islandRepublic of KoreaKORAsia
61490Sea sandJeju IslandRepublic of KoreaKORAsia2007-07-18
67771From sea sandJeju islandRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Sandy

taxonmaps

  • @ref: 69479
  • File name: preview.99_108105.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_43347;97_55478;98_73429;99_108105&stattab=map
  • Last taxonomy: Bacillus chungangensis subclade
  • 16S sequence: FJ514932
  • Sequence Identity:
  • Total samples: 1374
  • soil counts: 764
  • aquatic counts: 164
  • animal counts: 346
  • plant counts: 100

Safety information

risk assessment

  • @ref: 17394
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17394
  • description: Bacillus chungangensis 16S ribosomal RNA gene, partial sequence
  • accession: FJ514932
  • length: 1468
  • database: ena
  • NCBI tax ID: 587633

Genome sequences

  • @ref: 66792
  • description: Bacillus chungangensis DSM 23837
  • accession: 2926488731
  • assembly level: draft
  • database: img
  • NCBI tax ID: 587633

GC content

@refGC-content
1739435.0
2946435

External links

@ref: 17394

culture collection no.: DSM 23837, CCUG 57835, KCTC 13566, CAU 348

straininfo link

  • @ref: 70950
  • straininfo: 370115

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19667364Bacillus chungangensis sp. nov., a halophilic species isolated from sea sand.Cho SL, Jung MY, Park MH, Kim WInt J Syst Evol Microbiol10.1099/ijs.0.013607-02009Bacillus/classification/*genetics/metabolism, Caseins/metabolism, Molecular Sequence Data, Monosaccharides/metabolism, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater, Silicon DioxideMetabolism
Phylogeny23934481Bacillus oceani sp. nov., a new slightly halophilic bacterium, isolated from a deep sea sediment environment.Liu YJ, Long LJ, Huang XF, You ZQ, Wang FZ, Li J, Kim CJ, Tian XP, Zhang SAntonie Van Leeuwenhoek10.1007/s10482-013-9995-02013Aerobiosis, Bacillus/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Carbon/metabolism, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/microbiology, Molecular Sequence Data, Nitrogen/metabolism, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, TemperatureMetabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17394Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23837)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23837
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29464Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2586728776041
61490Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 57835)https://www.ccug.se/strain?id=57835
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70950Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID370115.1StrainInfo: A central database for resolving microbial strain identifiers