Strain identifier
BacDive ID: 1299
Type strain:
Species: Bacillus chungangensis
Strain history: <- WY Kim, Chung-Ang Univ., Korea
NCBI tax ID(s): 587633 (species)
General
@ref: 17394
BacDive-ID: 1299
DSM-Number: 23837
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped
description: Bacillus chungangensis DSM 23837 is an aerobe, spore-forming, mesophilic bacterium that was isolated from sea sand.
NCBI tax id
- NCBI tax id: 587633
- Matching level: species
strain history
@ref | history |
---|---|
17394 | <- CCUG <- W. Kim, Chung-Ang Univ., Seoul, Republic of Korea |
67771 | <- WY Kim, Chung-Ang Univ., Korea |
doi: 10.13145/bacdive1299.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus chungangensis
- full scientific name: Bacillus chungangensis Cho et al. 2010
@ref: 17394
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus chungangensis
full scientific name: Bacillus chungangensis Cho et al. 2010
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
29464 | positive | 2.5 µm | 0.8 µm | rod-shaped | yes |
67771 | rod-shaped | yes | |||
67771 | positive |
colony morphology
- @ref: 61490
- incubation period: 1 day
Culture and growth conditions
culture medium
- @ref: 17394
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
17394 | positive | growth | 30 | mesophilic |
29464 | positive | growth | 04-45 | |
29464 | positive | optimum | 30 | mesophilic |
61490 | positive | growth | 37 | mesophilic |
67771 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
29464 | positive | growth | 4.5-9 | alkaliphile |
29464 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
29464 | aerobe |
67771 | aerobe |
spore formation
@ref | spore formation | type of spore |
---|---|---|
29464 | yes | |
67771 | yes | spore |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
29464 | NaCl | positive | growth | 0-15 % |
29464 | NaCl | positive | optimum | 5 % |
observation
- @ref: 67771
- observation: quinones: MK-7
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29464 | 28757 | fructose | + | carbon source |
29464 | 17234 | glucose | + | carbon source |
29464 | 26546 | rhamnose | + | carbon source |
29464 | 33942 | ribose | + | carbon source |
29464 | 17814 | salicin | + | carbon source |
29464 | 17992 | sucrose | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
29464 | catalase | + | 1.11.1.6 |
29464 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|
17394 | sea sand | Jeju island | Republic of Korea | KOR | Asia | |
61490 | Sea sand | Jeju Island | Republic of Korea | KOR | Asia | 2007-07-18 |
67771 | From sea sand | Jeju island | Republic of Korea | KOR | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Terrestrial | #Sandy |
taxonmaps
- @ref: 69479
- File name: preview.99_108105.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_43347;97_55478;98_73429;99_108105&stattab=map
- Last taxonomy: Bacillus chungangensis subclade
- 16S sequence: FJ514932
- Sequence Identity:
- Total samples: 1374
- soil counts: 764
- aquatic counts: 164
- animal counts: 346
- plant counts: 100
Safety information
risk assessment
- @ref: 17394
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17394
- description: Bacillus chungangensis 16S ribosomal RNA gene, partial sequence
- accession: FJ514932
- length: 1468
- database: ena
- NCBI tax ID: 587633
Genome sequences
- @ref: 66792
- description: Bacillus chungangensis DSM 23837
- accession: 2926488731
- assembly level: draft
- database: img
- NCBI tax ID: 587633
GC content
@ref | GC-content |
---|---|
17394 | 35.0 |
29464 | 35 |
External links
@ref: 17394
culture collection no.: DSM 23837, CCUG 57835, KCTC 13566, CAU 348
straininfo link
- @ref: 70950
- straininfo: 370115
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19667364 | Bacillus chungangensis sp. nov., a halophilic species isolated from sea sand. | Cho SL, Jung MY, Park MH, Kim W | Int J Syst Evol Microbiol | 10.1099/ijs.0.013607-0 | 2009 | Bacillus/classification/*genetics/metabolism, Caseins/metabolism, Molecular Sequence Data, Monosaccharides/metabolism, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater, Silicon Dioxide | Metabolism |
Phylogeny | 23934481 | Bacillus oceani sp. nov., a new slightly halophilic bacterium, isolated from a deep sea sediment environment. | Liu YJ, Long LJ, Huang XF, You ZQ, Wang FZ, Li J, Kim CJ, Tian XP, Zhang S | Antonie Van Leeuwenhoek | 10.1007/s10482-013-9995-0 | 2013 | Aerobiosis, Bacillus/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Carbon/metabolism, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/microbiology, Molecular Sequence Data, Nitrogen/metabolism, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Metabolism |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
17394 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23837) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23837 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
29464 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25867 | 28776041 | |
61490 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 57835) | https://www.ccug.se/strain?id=57835 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
70950 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID370115.1 | StrainInfo: A central database for resolving microbial strain identifiers |