Strain identifier

BacDive ID: 12989

Type strain: No

Species: Pseudomonas sp.

Strain Designation: 3.2-34

Strain history: <- E. Stackebrandt, DSMZ <- O. Päuker, DSMZ; WB 3.2-34

NCBI tax ID(s): 306 (species)

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General

@ref: 15551

BacDive-ID: 12989

DSM-Number: 21090

keywords: 16S sequence, Bacteria, mesophilic

description: Pseudomonas sp. 3.2-34 is a mesophilic bacterium that was isolated from water of karst water creek.

NCBI tax id

  • NCBI tax id: 306
  • Matching level: species

strain history

  • @ref: 15551
  • history: <- E. Stackebrandt, DSMZ <- O. Päuker, DSMZ; WB 3.2-34

doi: 10.13145/bacdive12989.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas sp.
  • full scientific name: Pseudomonas Migula 1894 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Flavimonas
    20215Serpens
    20215Chryseomonas
    20215Zestomonas
    20215Phytopseudomonas
    20215Caenipseudomonas
    20215Aquipseudomonas
    20215Ectopseudomonas
    20215Metapseudomonas
    20215Geopseudomonas

@ref: 15551

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas sp.

full scientific name: Pseudomonas sp.

strain designation: 3.2-34

type strain: no

Culture and growth conditions

culture medium

  • @ref: 15551
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 15551
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836917306maltose-assimilation
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
15551--------++++--++-++--

Isolation, sampling and environmental information

isolation

  • @ref: 15551
  • sample type: water of karst water creek
  • geographic location: Westerhoefer Bach, slpoes of Harz mountains
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #River (Creek)

Sequence information

16S sequences

  • @ref: 15551
  • description: Pseudomonas sp. WB3.2-34 partial 16S rRNA gene, strain WB3.2-34
  • accession: AM934696
  • length: 1509
  • database: nuccore
  • NCBI tax ID: 498329

External links

@ref: 15551

culture collection no.: DSM 21090, WB 3.2-34

straininfo link

  • @ref: 82199
  • straininfo: 400027

Reference

@idauthorscataloguedoi/urltitle
15551Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21090)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21090
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68369Automatically annotated from API 20NE
82199Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400027.1StrainInfo: A central database for resolving microbial strain identifiers