Strain identifier
BacDive ID: 1295
Type strain:
Species: Salisediminibacterium beveridgei
Strain Designation: MLTeJB
Strain history: <- DSM <- SM Baesman, US Geological Survey, Menlo Park, USA, MLTeJB
NCBI tax ID(s): 632773 (species)
General
@ref: 16279
BacDive-ID: 1295
DSM-Number: 22320
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile, rod-shaped
description: Salisediminibacterium beveridgei MLTeJB is an anaerobe, mesophilic, motile bacterium that was isolated from sediment collected from the north east shore of Mono Lake.
NCBI tax id
- NCBI tax id: 632773
- Matching level: species
strain history
@ref | history |
---|---|
16279 | <- S. M. Baesman, US Geological Survey, Menlo Park, USA; MLTeJB |
67771 | <- DSM <- SM Baesman, US Geological Survey, Menlo Park, USA, MLTeJB |
doi: 10.13145/bacdive1295.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Salisediminibacterium
- species: Salisediminibacterium beveridgei
- full scientific name: Salisediminibacterium beveridgei (Baesman et al. 2010) Gupta et al. 2020
synonyms
- @ref: 20215
- synonym: Bacillus beveridgei
@ref: 16279
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Salisediminibacterium
species: Salisediminibacterium beveridgei
full scientific name: Salisediminibacterium beveridgei (Baesman et al. 2010) Gupta et al. 2020
strain designation: MLTeJB
type strain: yes
Morphology
cell morphology
@ref | cell shape | motility | flagellum arrangement | gram stain | confidence |
---|---|---|---|---|---|
67771 | rod-shaped | yes | peritrichous | ||
67771 | positive | ||||
69480 | yes | 95.685 | |||
69480 | positive | 100 |
Culture and growth conditions
culture medium
- @ref: 16279
- name: ANAEROBACILLUS ARSENICISELENATIS MEDIUM (DSMZ Medium 968)
- growth: yes
- link: https://mediadive.dsmz.de/medium/968
- composition: Name: ANAEROBACILLUS ARSENICISELENATIS MEDIUM (DSMZ Medium 968) Composition: NaCl 89.8204 g/l Na2CO3 10.5788 g/l NaHCO3 4.19162 g/l Na-DL-lactate 1.69661 g/l NaNO3 1.2475 g/l L-Cysteine HCl x H2O 0.249501 g/l Na2S x 9 H2O 0.249501 g/l Yeast extract 0.199601 g/l K2HPO4 0.149701 g/l (NH4)2SO4 0.0998004 g/l KH2PO4 0.0798403 g/l MgSO4 0.0249501 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l NaOH 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l MnCl2 x 4 H2O 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l H3BO3 5.98802e-06 g/l Na2WO4 x 2 H2O 3.99202e-06 g/l Na2SeO3 x 5 H2O 2.99401e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16279 | positive | growth | 30 | mesophilic |
67771 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
16279 | anaerobe |
67771 | anaerobe |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
16279 | sediment collected from the north east shore of Mono Lake | California | USA | USA | North America |
67771 | From sediment collected from the north east shore of Mono Lake, an alkaline hypersaline soda lake | California | USA | USA | North America |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Lake (large) |
#Environmental | #Aquatic | #Sediment |
#Environmental | #Terrestrial | #Coast |
taxonmaps
- @ref: 69479
- File name: preview.99_183803.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1506;97_1797;98_2196;99_183803&stattab=map
- Last taxonomy: Bacillus
- 16S sequence: FJ825145
- Sequence Identity:
- Total samples: 5
- aquatic counts: 5
Safety information
risk assessment
- @ref: 16279
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16279
- description: Bacillus beveridgei strain MLTeJB 16S ribosomal RNA gene, partial sequence
- accession: FJ825145
- length: 1531
- database: ena
- NCBI tax ID: 632773
Genome sequences
- @ref: 66792
- description: Salisediminibacterium beveridgei MLTeJB
- accession: GCA_001721685
- assembly level: complete
- database: ncbi
- NCBI tax ID: 632773
GC content
@ref | GC-content | method |
---|---|---|
16279 | 46.6 | high performance liquid chromatography (HPLC) |
67771 | 46.8 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 61 | no |
flagellated | yes | 59.522 | no |
gram-positive | yes | 82.601 | yes |
anaerobic | no | 92.194 | no |
aerobic | no | 69.553 | yes |
halophile | yes | 84.8 | no |
spore-forming | yes | 65.434 | no |
glucose-util | yes | 87.501 | no |
thermophile | no | 92.058 | yes |
motile | yes | 79.562 | no |
glucose-ferment | no | 85.49 | no |
External links
@ref: 16279
culture collection no.: DSM 22320, ATCC BAA 1786, KCTC 15200
straininfo link
- @ref: 70946
- straininfo: 406219
literature
- topic: Phylogeny
- Pubmed-ID: 19536453
- title: Enrichment and isolation of Bacillus beveridgei sp. nov., a facultative anaerobic haloalkaliphile from Mono Lake, California, that respires oxyanions of tellurium, selenium, and arsenic.
- authors: Baesman SM, Stolz JF, Kulp TR, Oremland RS
- journal: Extremophiles
- DOI: 10.1007/s00792-009-0257-z
- year: 2009
- mesh: Anions, Arsenic/*metabolism, Bacillus/metabolism/*physiology, Biotechnology/methods, California, Ecology, Geologic Sediments, Microscopy, Electron, Scanning/methods, Oxygen/chemistry, Phylogeny, Salts/*chemistry, Selenium/*metabolism, Tellurium/*metabolism, Time Factors, Water
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
16279 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22320) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22320 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
70946 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406219.1 | StrainInfo: A central database for resolving microbial strain identifiers |