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Strain identifier

BacDive ID: 1295

Type strain: Yes

Species: Salisediminibacterium beveridgei

Strain Designation: MLTeJB

Strain history: <- DSM <- SM Baesman, US Geological Survey, Menlo Park, USA, MLTeJB

NCBI tax ID(s): 632773 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16279

BacDive-ID: 1295

DSM-Number: 22320

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, motile, rod-shaped

description: Salisediminibacterium beveridgei MLTeJB is an anaerobe, mesophilic, motile bacterium that was isolated from sediment collected from the north east shore of Mono Lake.

NCBI tax id

  • NCBI tax id: 632773
  • Matching level: species

strain history

doi: 10.13145/bacdive1295.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Salisediminibacterium
  • species: Salisediminibacterium beveridgei
  • full scientific name: Salisediminibacterium beveridgei (Baesman et al. 2010) Gupta et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Bacillus beveridgei

@ref: 16279

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Salisediminibacterium

species: Salisediminibacterium beveridgei

full scientific name: Salisediminibacterium beveridgei (Baesman et al. 2010) Gupta et al. 2020

strain designation: MLTeJB

type strain: yes

Morphology

cell morphology

@refcell shapemotilityflagellum arrangementgram stainconfidence
67771rod-shapedyesperitrichous
67771positive
69480yes73.104
69480positive94.964

Culture and growth conditions

culture medium

  • @ref: 16279
  • name: ANAEROBACILLUS ARSENICISELENATIS MEDIUM (DSMZ Medium 968)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/968
  • composition: Name: ANAEROBACILLUS ARSENICISELENATIS MEDIUM (DSMZ Medium 968) Composition: NaCl 89.8204 g/l Na2CO3 10.5788 g/l NaHCO3 4.19162 g/l Na-DL-lactate 1.69661 g/l NaNO3 1.2475 g/l L-Cysteine HCl x H2O 0.249501 g/l Na2S x 9 H2O 0.249501 g/l Yeast extract 0.199601 g/l K2HPO4 0.149701 g/l (NH4)2SO4 0.0998004 g/l KH2PO4 0.0798403 g/l MgSO4 0.0249501 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l NaOH 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l MnCl2 x 4 H2O 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l H3BO3 5.98802e-06 g/l Na2WO4 x 2 H2O 3.99202e-06 g/l Na2SeO3 x 5 H2O 2.99401e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16279positivegrowth30mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
16279anaerobe
67771anaerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 83.768

halophily

  • @ref: 69480
  • halophily level: halophilic
  • confidence: 99.122

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16279sediment collected from the north east shore of Mono LakeCaliforniaUSAUSANorth America
67771From sediment collected from the north east shore of Mono Lake, an alkaline hypersaline soda lakeCaliforniaUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Coast

taxonmaps

  • @ref: 69479
  • File name: preview.99_183803.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1506;97_1797;98_2196;99_183803&stattab=map
  • Last taxonomy: Bacillus
  • 16S sequence: FJ825145
  • Sequence Identity:
  • Total samples: 5
  • aquatic counts: 5

Safety information

risk assessment

  • @ref: 16279
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16279
  • description: Bacillus beveridgei strain MLTeJB 16S ribosomal RNA gene, partial sequence
  • accession: FJ825145
  • length: 1531
  • database: ena
  • NCBI tax ID: 632773

Genome sequences

  • @ref: 66792
  • description: Salisediminibacterium beveridgei MLTeJB
  • accession: GCA_001721685
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 632773

GC content

@refGC-contentmethod
1627946.6high performance liquid chromatography (HPLC)
6777146.8

External links

@ref: 16279

culture collection no.: DSM 22320, ATCC BAA 1786, KCTC 15200

straininfo link

@refpassport
20218http://www.straininfo.net/strains/856049
20218http://www.straininfo.net/strains/856048

literature

  • topic: Phylogeny
  • Pubmed-ID: 19536453
  • title: Enrichment and isolation of Bacillus beveridgei sp. nov., a facultative anaerobic haloalkaliphile from Mono Lake, California, that respires oxyanions of tellurium, selenium, and arsenic.
  • authors: Baesman SM, Stolz JF, Kulp TR, Oremland RS
  • journal: Extremophiles
  • DOI: 10.1007/s00792-009-0257-z
  • year: 2009
  • mesh: Anions, Arsenic/*metabolism, Bacillus/metabolism/*physiology, Biotechnology/methods, California, Ecology, Geologic Sediments, Microscopy, Electron, Scanning/methods, Oxygen/chemistry, Phylogeny, Salts/*chemistry, Selenium/*metabolism, Tellurium/*metabolism, Time Factors, Water
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16279Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22320)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22320
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)