Strain identifier

BacDive ID: 12949

Type strain: No

Species: Pseudomonas sp.

Strain Designation: ChinIK

Strain history: <- J.R. Andreesen <- M. Blaschke, Pseduomonas putida ChinIK

NCBI tax ID(s): 306 (species)

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General

@ref: 2633

BacDive-ID: 12949

DSM-Number: 6412

keywords: Bacteria, mesophilic

description: Pseudomonas sp. ChinIK is a mesophilic bacterium that was isolated from sewage sludge.

NCBI tax id

  • NCBI tax id: 306
  • Matching level: species

strain history

  • @ref: 2633
  • history: <- J.R. Andreesen <- M. Blaschke, Pseduomonas putida ChinIK

doi: 10.13145/bacdive12949.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas sp.
  • full scientific name: Pseudomonas Migula 1894 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Flavimonas
    20215Serpens
    20215Chryseomonas
    20215Zestomonas
    20215Phytopseudomonas
    20215Caenipseudomonas
    20215Aquipseudomonas
    20215Ectopseudomonas
    20215Metapseudomonas
    20215Geopseudomonas

@ref: 2633

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas sp.

full scientific name: Pseudomonas sp.

strain designation: ChinIK

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2633MINERAL MEDIUM WITH QUINOLINE (DSMZ Medium 461a)yeshttps://mediadive.dsmz.de/medium/461aName: MINERAL MEDIUM WITH QUINOLINE (DSMZ Medium 461a) Composition: Na2HPO4 x 2 H2O 1.31032 g/l MgSO4 x 7 H2O 0.451835 g/l Quinoline 0.272727 g/l NH4Cl 0.271101 g/l KH2PO4 0.225917 g/l NaCl 0.0451835 g/l CaCl2 0.00903669 g/l MnSO4 0.00903669 g/l HCl 0.00225917 g/l FeCl2 x 4 H2O 0.0013555 g/l Pantothenic acid 0.000225917 g/l Vitamin B12 0.000225917 g/l Riboflavin 0.000225917 g/l alpha-lipoic acid 0.000225917 g/l p-Aminobenzoic acid 0.000225917 g/l Thiamine-HCl x 2 H2O 0.000225917 g/l CoCl2 x 6 H2O 0.000171697 g/l Nicotine amide 0.000112959 g/l Nicotinic acid 0.000112959 g/l Biotin 9.03669e-05 g/l Folic acid 9.03669e-05 g/l MnCl2 x 4 H2O 9.03669e-05 g/l ZnCl2 6.32568e-05 g/l Pyridoxamine hydrochloride 4.51834e-05 g/l Na2MoO4 x 2 H2O 3.25321e-05 g/l NiCl2 x 6 H2O 2.16881e-05 g/l H3BO3 5.42201e-06 g/l CuCl2 x 2 H2O 1.80734e-06 g/l Phosphate buffer Distilled water
2633NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 2633
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
2633+--+----+++++-++-++++

Isolation, sampling and environmental information

isolation

  • @ref: 2633
  • sample type: sewage sludge
  • geographic location: Göttingen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Waste
  • Cat3: #Sewage sludge

External links

@ref: 2633

culture collection no.: DSM 6412

straininfo link

  • @ref: 82161
  • straininfo: 48188

Reference

@idauthorscataloguedoi/urltitle
2633Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6412)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6412
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68369Automatically annotated from API 20NE
82161Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48188.1StrainInfo: A central database for resolving microbial strain identifiers