Strain identifier

BacDive ID: 1294

Type strain: Yes

Species: Alkalihalobacillus trypoxylicola

Strain Designation: SU1

Strain history: <- NBRC; NBRC 102646 <- M. Urai, Nihon Univ., College of Bioresource Sci., Fujisawa, Japan; SU1

NCBI tax ID(s): 1223507 (strain), 519424 (species)

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General

@ref: 17990

BacDive-ID: 1294

DSM-Number: 25300

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Alkalihalobacillus trypoxylicola SU1 is an aerobe, spore-forming, mesophilic bacterium that was isolated from larval guts of Japanese horned beetle Trypoxylus dichotomus septentrionalis.

NCBI tax id

NCBI tax idMatching level
519424species
1223507strain

strain history

  • @ref: 17990
  • history: <- NBRC; NBRC 102646 <- M. Urai, Nihon Univ., College of Bioresource Sci., Fujisawa, Japan; SU1

doi: 10.13145/bacdive1294.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Alkalihalobacillus
  • species: Alkalihalobacillus trypoxylicola
  • full scientific name: Alkalihalobacillus trypoxylicola (Aizawa et al. 2010) Patel and Gupta 2020

  • synonyms

    • @ref: 20215
    • synonym: Bacillus trypoxylicola

@ref: 17990

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Alkalihalobacillus

species: Alkalihalobacillus trypoxylicola

full scientific name: Alkalihalobacillus trypoxylicola (Aizawa et al. 2010) Patel and Gupta 2020

strain designation: SU1

type strain: yes

Morphology

cell morphology

  • @ref: 29085
  • gram stain: positive
  • cell length: 1.4 µm
  • cell width: 0.6 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 29085
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 17990
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17990positivegrowth30mesophilic
29085positivegrowth17-37
29085positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
29085positivegrowth08-10alkaliphile
29085positiveoptimum9

Physiology and metabolism

oxygen tolerance

  • @ref: 29085
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29085
  • spore formation: yes

halophily

  • @ref: 29085
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2908517057cellobiose+carbon source
2908528757fructose+carbon source
2908528260galactose+carbon source
2908517234glucose+carbon source
2908517754glycerol+carbon source
2908528087glycogen+carbon source
2908517716lactose+carbon source
2908529864mannitol+carbon source
2908537684mannose+carbon source
2908528053melibiose+carbon source
2908516634raffinose+carbon source
2908526546rhamnose+carbon source
2908517814salicin+carbon source
2908517992sucrose+carbon source
2908527082trehalose+carbon source

enzymes

@refvalueactivityec
29085acid phosphatase+3.1.3.2
29085alkaline phosphatase+3.1.3.1
29085alpha-galactosidase+3.2.1.22

Isolation, sampling and environmental information

isolation

  • @ref: 17990
  • sample type: larval guts of Japanese horned beetle Trypoxylus dichotomus septentrionalis
  • host species: Trypoxylus dichotomus septentrionalis
  • geographic location: Kanagawa
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body-Site#Gastrointestinal tract

Safety information

risk assessment

  • @ref: 17990
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Bacillus trypoxylicola gene for 16S rRNA, partial sequence, strain: NBRC 102646AB6818951476ena519424
17990Bacillus trypoxylicola gene for 16S ribosomal RNA, partial sequence, strain: SU1AB4342841509ena519424

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alkalihalobacillus trypoxylicola NBRC 102646GCA_001592025contigncbi1223507
66792Alkalihalobacillus trypoxylicola KCTC 13244GCA_001590785scaffoldncbi519424
66792Bacillus trypoxylicola NBRC 1026461223507.3wgspatric1223507
66792Bacillus trypoxylicola strain KCTC 13244519424.4wgspatric519424
66792Bacillus trypoxylicola KCTC 132442724679199draftimg519424
66792Bacillus trypoxylicola NBRC 1026462731957677draftimg1223507

GC content

  • @ref: 17990
  • GC-content: 37.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes89.087yes
gram-positiveyes93.655yes
anaerobicno99.328no
aerobicyes84.074no
halophileyes83.312no
spore-formingyes95.649yes
glucose-utilyes91.312no
flagellatedyes76.577yes
thermophileno99.397no
glucose-fermentno91.493no

External links

@ref: 17990

culture collection no.: DSM 25300, KCTC 13244, NBRC 102646

straininfo link

  • @ref: 70945
  • straininfo: 400977

literature

  • topic: Phylogeny
  • Pubmed-ID: 19648346
  • title: Bacillus trypoxylicola sp. nov., xylanase-producing alkaliphilic bacteria isolated from the guts of Japanese horned beetle larvae (Trypoxylus dichotomus septentrionalis).
  • authors: Aizawa T, Urai M, Iwabuchi N, Nakajima M, Sunairi M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.005843-0
  • year: 2009
  • mesh: Alkalies/*metabolism, Animals, Bacillus/*classification/enzymology/genetics/*isolation & purification, Bacterial Proteins/*metabolism, Base Composition, Coleoptera/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Endo-1,4-beta Xylanases/*metabolism, Fatty Acids/metabolism, Intestines/microbiology, Larva/microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
17990Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25300)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25300
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
29085Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604125514
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
70945Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400977.1StrainInfo: A central database for resolving microbial strain identifiers