Strain identifier

BacDive ID: 12927

Type strain: Yes

Species: Pseudomonas savastanoi

Strain history: CIP <- 1993, J.D. Janse, Plant Protection Service, Wageningen, The Netherlands: strain PD 118 <- D. Sutic, Pseudomonas syringae subsp. savastanoi

NCBI tax ID(s): 29438 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8058

BacDive-ID: 12927

DSM-Number: 19341

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped, plant pathogen

description: Pseudomonas savastanoi DSM 19341 is an obligate aerobe, mesophilic, Gram-negative plant pathogen that was isolated from Olea europaea.

NCBI tax id

  • NCBI tax id: 29438
  • Matching level: species

strain history

@refhistory
8058<- J.-M. Meyer,Inst. Botanique, Strasbourg <- CFBP
122495CIP <- 1993, J.D. Janse, Plant Protection Service, Wageningen, The Netherlands: strain PD 118 <- D. Sutic, Pseudomonas syringae subsp. savastanoi

doi: 10.13145/bacdive12927.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas savastanoi
  • full scientific name: Pseudomonas savastanoi (Janse 1982 ex Smith 1908) Gardan et al. 1992
  • synonyms

    • @ref: 20215
    • synonym: Pseudomonas syringae subsp. savastanoi

@ref: 8058

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas savastanoi

full scientific name: Pseudomonas savastanoi (Janse 1982) Gardan et al. 1992

type strain: yes

Morphology

cell morphology

  • @ref: 122495
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 122495
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8058NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
39851MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
122495CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
8058positivegrowth28mesophilic
39851positivegrowth30mesophilic
122495positivegrowth30mesophilic
122495nogrowth5psychrophilic
122495nogrowth41thermophilic
122495nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 122495
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
12249516947citrate+carbon source
1224954853esculin-hydrolysis
12249517632nitrate-reduction
12249516301nitrite-reduction
12249515882phenol-degradation
12249517632nitrate-respiration

antibiotic resistance

  • @ref: 122495
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12249535581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
122495oxidase-
122495beta-galactosidase-3.2.1.23
122495alcohol dehydrogenase-1.1.1.1
122495gelatinase-
122495amylase-
122495caseinase-3.4.21.50
122495catalase+1.11.1.6
122495tween esterase-
122495lecithinase-
122495lysine decarboxylase-4.1.1.18
122495ornithine decarboxylase-4.1.1.17
122495urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122495--------------------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
8058--------+-++--++-++--

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountrycontinent
8058Olea europaeaOlea europaeaYugoslaviaEurope
122495Food, Olea europeaYugoslavia

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Tree

taxonmaps

  • @ref: 69479
  • File name: preview.99_108.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_98;99_108&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: HM190226
  • Sequence Identity:
  • Total samples: 1469
  • soil counts: 744
  • aquatic counts: 346
  • animal counts: 234
  • plant counts: 145

Safety information

risk assessment

@refpathogenicity plantbiosafety levelbiosafety level comment
8058yes1Risk group (German classification)
1224951Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pseudomonas savastanoi pv. savastanoi culture-collection CFBP:1670 16S ribosomal RNA gene, partial sequenceHM1902261444ena360920
8058Pseudomonas savastanoi gene for 16S rRNA, strain: ATCC 13522AB0214021502ena29438

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas savastanoi pv. savastanoi ICMP 4352GCA_001401285scaffoldncbi360920
66792Pseudomonas savastanoi pv. savastanoi strain ICMP4352360920.13wgspatric360920
66792Pseudomonas savastanoi pv. savastanoi ICMP 43522713896865draftimg360920

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes70.082no
gram-positiveno98.199no
anaerobicno97.924no
aerobicyes93.335no
halophileno93.882no
spore-formingno94.251no
glucose-utilyes95.291yes
thermophileno99.735yes
motileyes90.686no
glucose-fermentno89.565no

External links

@ref: 8058

culture collection no.: DSM 19341, ATCC 13522, CFBP 1670, ICMP 4352, LMG 2209, NCPPB 639, CIP 103721, PD 118

straininfo link

  • @ref: 82139
  • straininfo: 377522

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8058Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19341)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19341
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39851Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15550
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82139Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID377522.1StrainInfo: A central database for resolving microbial strain identifiers
122495Curators of the CIPCollection of Institut Pasteur (CIP 103721)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103721