Strain identifier

BacDive ID: 1292

Type strain: Yes

Species: Solibacillus isronensis

Strain Designation: B3W22

Strain history: S. Shivaji B3W22.

NCBI tax ID(s): 412383 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 15483

BacDive-ID: 1292

DSM-Number: 21046

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, rod-shaped

description: Solibacillus isronensis B3W22 is a spore-forming, mesophilic, rod-shaped bacterium that was isolated from cryogenic tube used for collecting air from an altitude of 27–30 km.

NCBI tax id

  • NCBI tax id: 412383
  • Matching level: species

strain history

@refhistory
15483<- S. Shivaji, Centre for Cellular and Molecular Biology, Hyderabad, India; B3W22
67770S. Shivaji B3W22.

doi: 10.13145/bacdive1292.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Solibacillus
  • species: Solibacillus isronensis
  • full scientific name: Solibacillus isronensis (Shivaji et al. 2009) Mual et al. 2016
  • synonyms

    • @ref: 20215
    • synonym: Bacillus isronensis

@ref: 15483

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacilli, not assigned to family

genus: Solibacillus

species: Solibacillus isronensis

full scientific name: Bacillus isronensis Shivaji et al. 2009

strain designation: B3W22

type strain: yes

Morphology

cell morphology

  • @ref: 43968
  • cell shape: rod-shaped

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 43968
  • spore description: round endospores, terminal
  • type of spore: spore
  • spore formation: yes

observation

  • @ref: 67770
  • observation: quinones: MK-6, MK-7, MK-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4396817234glucose-fermentation
4396828017starch-hydrolysis
4396817632nitrate-reduction

metabolite production

  • @ref: 43968
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 43968
  • Chebi-ID: 17234
  • metabolite: glucose
  • methylred-test: -

enzymes

@refvalueactivityec
43968catalase+1.11.1.6
43968urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
15483cryogenic tube used for collecting air from an altitude of 27–30 kmIndiaINDAsia
43968cryotubes that were used to collect air samples from high altitudes
67770Cryogenic tube used for collecting an air sample from an altitude of 27-30 km

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Engineered product
#Condition#Psychrophilic (<10°C)
#Engineered#Laboratory
#Environmental#Air#Outdoor Air

taxonmaps

  • @ref: 69479
  • File name: preview.99_1045.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_600;97_703;98_819;99_1045&stattab=map
  • Last taxonomy: Solibacillus
  • 16S sequence: EF114311
  • Sequence Identity:
  • Total samples: 48013
  • soil counts: 9955
  • aquatic counts: 4001
  • animal counts: 31464
  • plant counts: 2593

Safety information

risk assessment

  • @ref: 15483
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
15483Bacillus isronensis strain B3W22 16S ribosomal RNA gene, partial sequenceEF1143111541ena1224748
67770Bacillus isronensis genomic DNA containing 16S-23S intergenic spacer region, strain MTCC 7902, DSM 21046TLN681355435ena412383

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Solibacillus isronensis B3W222519899743draftimg1224748
67770Solibacillus isronensis B3W22GCA_000298255contigncbi1224748

GC content

  • @ref: 15483
  • GC-content: 40

External links

@ref: 15483

culture collection no.: DSM 21046, JCM 13838, MTCC 7902

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19643890Janibacter hoylei sp. nov., Bacillus isronensis sp. nov. and Bacillus aryabhattai sp. nov., isolated from cryotubes used for collecting air from the upper atmosphere.Shivaji S, Chaturvedi P, Begum Z, Pindi PK, Manorama R, Padmanaban DA, Shouche YS, Pawar S, Vaishampayan P, Dutt CB, Datta GN, Manchanda RK, Rao UR, Bhargava PM, Narlikar JVInt J Syst Evol Microbiol10.1099/ijs.0.002527-02009Actinomycetales/*classification/genetics/*isolation & purification, Air/*analysis, *Air Microbiology, Bacillus/classification/genetics/*isolation & purification, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Equipment and Supplies/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsEnzymology
Genetics23144382Draft genome sequence of Bacillus isronensis strain B3W22, isolated from the upper atmosphere.Shivaji S, Ara S, Singh SK, Bandi S, Singh A, Pinnaka AKJ Bacteriol10.1128/JB.01651-122012*Air Microbiology, Atmosphere, Bacillus/*genetics/isolation & purification, DNA, Bacterial/*chemistry/*genetics, *Genome, Bacterial, India, Molecular Sequence Data, *Sequence Analysis, DNATranscriptome
Phylogeny26907585Reclassification of Bacillus isronensisShivaji et al. 2009 as Solibacillus isronensis comb. nov. and emended description of genus Solibacillus Krishnamurthi et al. 2009.Mual P, Singh NK, Verma A, Schumann P, Krishnamurthi S, Dastager S, Mayilraj SInt J Syst Evol Microbiol10.1099/ijsem.0.0009822016Bacillus/*classification, Bacterial Typing Techniques, DNA, Bacterial/genetics, DNA, Ribosomal Spacer/genetics, Fatty Acids/chemistry, Genes, Bacterial, Lipids/chemistry, Peptidoglycan/chemistry, *Phylogeny, Planococcaceae/*classification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spores, Bacterial, Vitamin K 2/chemistryTranscriptome
Phylogeny28475026Solibacillus kalamii sp. nov., isolated from a high-efficiency particulate arrestance filter system used in the International Space Station.Checinska Sielaff A, Kumar RM, Pal D, Mayilraj S, Venkateswaran KInt J Syst Evol Microbiol10.1099/ijsem.0.0017062017*Air Microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Spacecraft, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15483Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21046)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21046
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
43968Poonam Mual, Nitin Kumar Singh, Ashish Verma, Peter Schumann, Srinivasan Krishnamurthi, Syed Dastager, Shanmugam Mayilraj10.1099/ijsem.0.000982Reclassification of Bacillus isronensis Shivaji et al. 2009 as Solibacillus isronensis comb. nov. and emended description of genus Solibacillus Krishnamurthi et al. 2009IJSEM 66: 2113-2120 201626907585
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta