Strain identifier
BacDive ID: 1292
Type strain:
Species: Solibacillus isronensis
Strain Designation: B3W22
Strain history: S. Shivaji B3W22.
NCBI tax ID(s): 412383 (species)
General
@ref: 15483
BacDive-ID: 1292
DSM-Number: 21046
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, rod-shaped
description: Solibacillus isronensis B3W22 is a spore-forming, mesophilic, rod-shaped bacterium that was isolated from cryogenic tube used for collecting air from an altitude of 27–30 km.
NCBI tax id
- NCBI tax id: 412383
- Matching level: species
strain history
@ref | history |
---|---|
15483 | <- S. Shivaji, Centre for Cellular and Molecular Biology, Hyderabad, India; B3W22 |
67770 | S. Shivaji B3W22. |
doi: 10.13145/bacdive1292.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Solibacillus
- species: Solibacillus isronensis
- full scientific name: Solibacillus isronensis (Shivaji et al. 2009) Mual et al. 2016
synonyms
- @ref: 20215
- synonym: Bacillus isronensis
@ref: 15483
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacilli, not assigned to family
genus: Solibacillus
species: Solibacillus isronensis
full scientific name: Bacillus isronensis Shivaji et al. 2009
strain designation: B3W22
type strain: yes
Morphology
cell morphology
- @ref: 43968
- cell shape: rod-shaped
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 43968
- spore description: round endospores, terminal
- type of spore: spore
- spore formation: yes
observation
- @ref: 67770
- observation: quinones: MK-6, MK-7, MK-8
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
43968 | 17234 | glucose | - | fermentation |
43968 | 28017 | starch | - | hydrolysis |
43968 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 43968
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 43968
- Chebi-ID: 17234
- metabolite: glucose
- methylred-test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
43968 | catalase | + | 1.11.1.6 |
43968 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
15483 | cryogenic tube used for collecting air from an altitude of 27–30 km | India | IND | Asia |
43968 | cryotubes that were used to collect air samples from high altitudes | |||
67770 | Cryogenic tube used for collecting an air sample from an altitude of 27-30 km |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Industrial | #Engineered product |
#Condition | #Psychrophilic (<10°C) | |
#Engineered | #Laboratory | |
#Environmental | #Air | #Outdoor Air |
taxonmaps
- @ref: 69479
- File name: preview.99_1045.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_600;97_703;98_819;99_1045&stattab=map
- Last taxonomy: Solibacillus
- 16S sequence: EF114311
- Sequence Identity:
- Total samples: 48013
- soil counts: 9955
- aquatic counts: 4001
- animal counts: 31464
- plant counts: 2593
Safety information
risk assessment
- @ref: 15483
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
15483 | Bacillus isronensis strain B3W22 16S ribosomal RNA gene, partial sequence | EF114311 | 1541 | ena | 1224748 |
67770 | Bacillus isronensis genomic DNA containing 16S-23S intergenic spacer region, strain MTCC 7902, DSM 21046T | LN681355 | 435 | ena | 412383 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Solibacillus isronensis B3W22 | 2519899743 | draft | img | 1224748 |
67770 | Solibacillus isronensis B3W22 | GCA_000298255 | contig | ncbi | 1224748 |
GC content
- @ref: 15483
- GC-content: 40
External links
@ref: 15483
culture collection no.: DSM 21046, JCM 13838, MTCC 7902
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19643890 | Janibacter hoylei sp. nov., Bacillus isronensis sp. nov. and Bacillus aryabhattai sp. nov., isolated from cryotubes used for collecting air from the upper atmosphere. | Shivaji S, Chaturvedi P, Begum Z, Pindi PK, Manorama R, Padmanaban DA, Shouche YS, Pawar S, Vaishampayan P, Dutt CB, Datta GN, Manchanda RK, Rao UR, Bhargava PM, Narlikar JV | Int J Syst Evol Microbiol | 10.1099/ijs.0.002527-0 | 2009 | Actinomycetales/*classification/genetics/*isolation & purification, Air/*analysis, *Air Microbiology, Bacillus/classification/genetics/*isolation & purification, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Equipment and Supplies/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics | Enzymology |
Genetics | 23144382 | Draft genome sequence of Bacillus isronensis strain B3W22, isolated from the upper atmosphere. | Shivaji S, Ara S, Singh SK, Bandi S, Singh A, Pinnaka AK | J Bacteriol | 10.1128/JB.01651-12 | 2012 | *Air Microbiology, Atmosphere, Bacillus/*genetics/isolation & purification, DNA, Bacterial/*chemistry/*genetics, *Genome, Bacterial, India, Molecular Sequence Data, *Sequence Analysis, DNA | Transcriptome |
Phylogeny | 26907585 | Reclassification of Bacillus isronensisShivaji et al. 2009 as Solibacillus isronensis comb. nov. and emended description of genus Solibacillus Krishnamurthi et al. 2009. | Mual P, Singh NK, Verma A, Schumann P, Krishnamurthi S, Dastager S, Mayilraj S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000982 | 2016 | Bacillus/*classification, Bacterial Typing Techniques, DNA, Bacterial/genetics, DNA, Ribosomal Spacer/genetics, Fatty Acids/chemistry, Genes, Bacterial, Lipids/chemistry, Peptidoglycan/chemistry, *Phylogeny, Planococcaceae/*classification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spores, Bacterial, Vitamin K 2/chemistry | Transcriptome |
Phylogeny | 28475026 | Solibacillus kalamii sp. nov., isolated from a high-efficiency particulate arrestance filter system used in the International Space Station. | Checinska Sielaff A, Kumar RM, Pal D, Mayilraj S, Venkateswaran K | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001706 | 2017 | *Air Microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Spacecraft, Vitamin K 2/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
15483 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21046) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21046 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
43968 | Poonam Mual, Nitin Kumar Singh, Ashish Verma, Peter Schumann, Srinivasan Krishnamurthi, Syed Dastager, Shanmugam Mayilraj | 10.1099/ijsem.0.000982 | Reclassification of Bacillus isronensis Shivaji et al. 2009 as Solibacillus isronensis comb. nov. and emended description of genus Solibacillus Krishnamurthi et al. 2009 | IJSEM 66: 2113-2120 2016 | 26907585 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |