Strain identifier
BacDive ID: 12902
Type strain: 
Species: Pseudomonas putida
Strain Designation: pUTK9
NCBI tax ID(s): 303 (species)
version 8.1 (current version)
General
@ref: 2778
BacDive-ID: 12902
DSM-Number: 6701
keywords: Bacteria
description: Pseudomonas putida pUTK9 is a bacterium of the family Pseudomonadaceae.
NCBI tax id
- NCBI tax id: 303
- Matching level: species
doi: 10.13145/bacdive12902.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas putida
- full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bacillus putidus 20215 Arthrobacter siderocapsulatus
@ref: 2778
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Pseudomonadales
family: Micrococcaceae
genus: Pseudomonas
species: Pseudomonas putida
full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895
strain designation: pUTK9
type strain: no
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | + | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | + | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | + | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2778 | - | - | - | + | - | - | - | - | + | - | + | - | - | - | + | + | - | + | + | + | + |
| 2778 | - | - | - | + | - | - | - | - | + | - | + | - | - | - | + | + | - | + | + | + | + |
Safety information
risk assessment
- @ref: 2778
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
External links
@ref: 2778
culture collection no.: DSM 6701, RB 1351
straininfo link
- @ref: 82115
- straininfo: 113082
literature
- topic: Enzymology
- Pubmed-ID: 10427037
- title: Factors influencing expression of luxCDABE and nah genes in Pseudomonas putida RB1353(NAH7, pUTK9) in dynamic systems.
- authors: Neilson JW, Pierce SA, Maier RM
- journal: Appl Environ Microbiol
- DOI: 10.1128/AEM.65.8.3473-3482.1999
- year: 1999
- mesh: Biodegradation, Environmental, Biological Availability, Colony Count, Microbial, Environmental Pollutants/metabolism/pharmacokinetics, Gene Expression, Genes, Bacterial, *Genes, Reporter, Kinetics, Luciferases/*genetics, Luminescence, Operon, Pseudomonas putida/*genetics/growth & development/metabolism
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 2778 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6701) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6701 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 68369 | Automatically annotated from API 20NE | |||
| 82115 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID113082.1 | StrainInfo: A central database for resolving microbial strain identifiers |