Strain identifier

BacDive ID: 1289

Type strain: Yes

Species: Bacillus inaquosorum

Strain Designation: DV7-B-4

Strain history: <- AP Rooney, NRRL <- F Cohan, Wesleyan Univ., USA

NCBI tax ID(s): 1236548 (strain), 483913 (species)

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General

@ref: 16123

BacDive-ID: 1289

DSM-Number: 22148

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic, rod-shaped

description: Bacillus inaquosorum DV7-B-4 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from arid soil.

NCBI tax id

NCBI tax idMatching level
1236548strain
483913species

strain history

@refhistory
16123<- A. P. Rooney, NRRL; NRRLB-23052 <- F. M. Cohan, Wesleyan Univ.; DV7-B-4
67771<- AP Rooney, NRRL <- F Cohan, Wesleyan Univ., USA

doi: 10.13145/bacdive1289.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus inaquosorum
  • full scientific name: Bacillus inaquosorum (Rooney et al. 2009) Dunlap et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Bacillus subtilis subsp. inaquosorum

@ref: 16123

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Bacillus

species: Bacillus inaquosorum

full scientific name: Bacillus inaquosorum (Rooney et al. 2009) Dunlap et al. 2020

strain designation: DV7-B-4

type strain: yes

Morphology

cell morphology

@refcell shapegram stainmotilityconfidence
67771rod-shaped
67771positive
69480yes96.586
69480positive100

Culture and growth conditions

culture medium

  • @ref: 16123
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16123positivegrowth30mesophilic
67771positivegrowth28-30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes100

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16123arid soilDeath Valley, CaliforniaUSAUSANorth America
67771From arid soilDeath Valley, CAUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Condition#Xerophilic

Safety information

risk assessment

  • @ref: 16123
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Bacillus inaquosus strain NRRL B-23052 16S ribosomal RNA gene, partial sequence
  • accession: EU138467
  • length: 1168
  • database: ena
  • NCBI tax ID: 483913

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bacillus inaquosorum KCTC 13429GCA_003148415completencbi483913
66792Bacillus inaquosorum KCTC 13429GCA_000332645contigncbi1236548
66792Bacillus subtilis subsp. inaquosorum KCTC 134291236548.3wgspatric1236548
66792Bacillus subtilis subsp. inaquosorum strain KCTC 13429483913.115completepatric483913
66792Bacillus subtilis inaquosorum KCTC 134292534682116draftimg1236548
66792Bacillus subtilis inaquosorum KCTC 134292875488945completeimg1236548

Genome-based predictions

predictions

  • trait: spore-forming
  • prediction: yes
  • confidence: 100
  • training_data: no

External links

@ref: 16123

culture collection no.: DSM 22148, KCTC 13429, BGSC 3A28, NRRL B-23052, CIP 110137

straininfo link

  • @ref: 70941
  • straininfo: 363450

literature

  • topic: Phylogeny
  • Pubmed-ID: 32939598
  • title: Bacillus rugosus sp. nov. producer of a diketopiperazine antimicrobial, isolated from marine sponge Spongia officinalis L.
  • authors: Bhattacharya D, de Los Santos Villalobos S, Ruiz VV, Selvin J, Mukherjee J
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-020-01472-9
  • year: 2020
  • mesh: Animals, Anti-Infective Agents/*metabolism, Bacillus/classification/genetics/*isolation & purification/*metabolism, Bacterial Typing Techniques, DNA, Bacterial/genetics, Diketopiperazines/*metabolism, Lipids/analysis, Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16123Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22148)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22148
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70941Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID363450.1StrainInfo: A central database for resolving microbial strain identifiers