Strain identifier

BacDive ID: 12883

Type strain: No

Species: Pseudomonas putida

Strain Designation: PaW611, pWW53-4

NCBI tax ID(s): 303 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 1524

BacDive-ID: 12883

DSM-Number: 3937

keywords: Bacteria

description: Pseudomonas putida PaW611 is a bacterium of the family Pseudomonadaceae.

NCBI tax id

  • NCBI tax id: 303
  • Matching level: species

doi: 10.13145/bacdive12883.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas putida
  • full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Bacillus putidus
    20215Arthrobacter siderocapsulatus

@ref: 1524

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Pseudomonadales

family: Micrococcaceae

genus: Pseudomonas

species: Pseudomonas putida

full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895

strain designation: PaW611, pWW53-4

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
1524---+----+-+---++-++++
1524---+----+-+---++-++++

Safety information

risk assessment

  • @ref: 1524
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

External links

@ref: 1524

culture collection no.: DSM 3937

straininfo link

  • @ref: 82096
  • straininfo: 112633

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology2997136Evolutionary conservation of genes coding for meta pathway enzymes within TOL plasmids pWW0 and pWW53.Keil H, Keil S, Pickup RW, Williams PAJ Bacteriol10.1128/jb.164.2.887-895.19851985Alcohol Oxidoreductases/biosynthesis/genetics, *Aldehyde Oxidoreductases, *Benzoates/*metabolism, Biological Evolution, Catechol 2,3-Dioxygenase, Cloning, Molecular, DNA Restriction Enzymes, DNA, Recombinant, *Dioxygenases, Enzyme Induction, Genes, Regulator, Hydrolases/biosynthesis/genetics, Operon, Oxygenases/biosynthesis/genetics, *Plasmids, *Proteins, Pseudomonas/enzymology/*genetics/metabolism, Xylenes/*metabolismMetabolism
Metabolism3076182Physical and functional mapping of two cointegrate plasmids derived from RP4 and TOL plasmid pDK1.Shaw LE, Williams PAJ Gen Microbiol10.1099/00221287-134-9-24631988Chromosome Mapping, DNA, Recombinant, Escherichia coli/genetics, Genes, Bacterial, Genes, Regulator, Operon, *Plasmids, Pseudomonas/*genetics, R Factors/*genetics, Restriction Mapping, Toluene/metabolism, Xylenes/metabolism
Enzymology3254935Comparison of the meta pathway operons on NAH plasmid pWW60-22 and TOL plasmid pWW53-4 and its evolutionary significance.Assinder SJ, Williams PAJ Gen Microbiol10.1099/00221287-134-10-27691988Biological Evolution, Cloning, Molecular, DNA/genetics, Genes, Regulator, *Genes, Viral, Naphthalenes, Nucleic Acid Hybridization, *Operon, *Plasmids, Pseudomonas/*genetics, Recombination, Genetic, Restriction Mapping, Salicylates, Salicylic AcidPhylogeny
Enzymology3309179Molecular analysis of regulatory and structural xyl genes of the TOL plasmid pWW53-4.Keil H, Keil S, Williams PAJ Gen Microbiol10.1099/00221287-133-5-11491987Chromosome Mapping, DNA, Bacterial, Enzyme Induction, Escherichia coli/enzymology, *Genes, *Genes, Bacterial, *Genes, Regulator, Promoter Regions, Genetic, Pseudomonas/enzymology/genetics, Toluene/*metabolismMetabolism
Genetics11591664Identification and characterization of Tn4656, a novel class II transposon carrying a set of toluene-degrading genes from TOL plasmid pWW53.Tsuda M, Genka HJ Bacteriol10.1128/JB.183.21.6215-6224.20012001*Bacterial Proteins, DNA Transposable Elements/*genetics, DNA-Binding Proteins/*genetics, *Genes, Bacterial, Genetic Complementation Test, Molecular Sequence Data, *Plasmids, Pseudomonas putida/genetics/metabolism, Sequence Homology, Nucleic Acid, Toluene/*metabolism, Trans-Activators/*genetics, Transcription Factors/*geneticsMetabolism

Reference

@idauthorscataloguedoi/urltitle
1524Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3937)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3937
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68369Automatically annotated from API 20NE
82096Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID112633.1StrainInfo: A central database for resolving microbial strain identifiers