Strain identifier
BacDive ID: 12873
Type strain: 
Species: Pseudomonas putida
Strain Designation: C-1
Strain history: <- O. Hayaishi; C-1 (Pseudomonas arvilla)
NCBI tax ID(s): 303 (species)
version 8.1 (current version)
General
@ref: 207
BacDive-ID: 12873
DSM-Number: 437
keywords: Bacteria, mesophilic, human pathogen
description: Pseudomonas putida C-1 is a mesophilic human pathogen that was isolated from soil.
NCBI tax id
- NCBI tax id: 303
- Matching level: species
strain history
- @ref: 207
- history: <- O. Hayaishi; C-1 (Pseudomonas arvilla)
doi: 10.13145/bacdive12873.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas putida
- full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bacillus putidus 20215 Arthrobacter siderocapsulatus
@ref: 207
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas putida
full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895
strain designation: C-1
type strain: no
Culture and growth conditions
culture medium
- @ref: 207
- name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1a
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 207
- growth: positive
- type: growth
- temperature: 26
- range: mesophilic
Physiology and metabolism
compound production
- @ref: 207
- compound: pyrocatechase
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | + | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | + | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | + | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | + | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 207 | - | - | - | + | - | - | - | - | + | - | + | + | + | + | + | + | - | + | + | + | + |
Isolation, sampling and environmental information
isolation
- @ref: 207
- sample type: soil
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 207
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
External links
@ref: 207
culture collection no.: DSM 437, ATCC 23974, DSM 50253
straininfo link
- @ref: 82085
- straininfo: 38308
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 14599591 | Catechol 1,2-dioxygenase from Pseudomonas putida in organic media--an electron paramagnetic resonance study. | Sanakis Y, Mamma D, Christakopoulos P, Stamatis H | Int J Biol Macromol | 10.1016/s0141-8130(03)00073-4 | 2003 | Catechol 1,2-Dioxygenase, *Dioxygenases, Electron Spin Resonance Spectroscopy/*methods, Freeze Drying, Hexanes/chemistry, Iron/chemistry/metabolism, Oxygenases/*chemistry/isolation & purification/*metabolism, Pseudomonas putida/*enzymology, Solutions | Enzymology |
| Pathogenicity | 15055938 | Combined photo-assisted and biological treatment of industrial oily wastewater. | Mamma D, Gerontas S, Philippopoulos CJ, Christakopoulos P, Macris BJ, Kekos D | J Environ Sci Health A Tox Hazard Subst Environ Eng | 10.1081/ese-120027738 | 2004 | Biodegradation, Environmental, Bioreactors, Cresols/chemistry, Ethylene Glycol/chemistry, Humans, Hydrogen Peroxide/chemistry, Oils/*chemistry, Oxidation-Reduction, Phenol/chemistry, Pseudomonas putida/*metabolism, Ultraviolet Rays, *Water Pollutants, Chemical, Water Purification/*methods | Metabolism |
| Enzymology | 16484065 | Removal of 1,3-dichloro2-propanol and 3-chloro1,2-propanediol by the whole cell system of pseudomonas putida DSM 437. | Mamma D, Papadopoulou E, Petroutsos D, Christakopoulos P, Kekos D | J Environ Sci Health A Tox Hazard Subst Environ Eng | 10.1080/10934520500423154 | 2006 | Biodegradation, Environmental, Biomass, Industrial Waste, Kinetics, Pseudomonas putida/*chemistry/metabolism, Waste Disposal, Fluid/*methods, Water Purification/*methods, alpha-Chlorohydrin/*analogs & derivatives/*isolation & purification/metabolism | Metabolism |
| Metabolism | 27262716 | 3-Chloro-1,2-propanediol biodegradation by Ca-alginate immobilized Pseudomonas putida DSM 437 cells applying different processes: mass transfer effects. | Konti A, Mamma D, Hatzinikolaou DG, Kekos D | Bioprocess Biosyst Eng | 10.1007/s00449-016-1635-4 | 2016 | Alginates/*chemistry, Cells, Immobilized/metabolism, Glucuronic Acid/chemistry, Hexuronic Acids/chemistry, Pseudomonas putida/*metabolism, alpha-Chlorohydrin/*metabolism |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 207 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 437) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-437 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 68369 | Automatically annotated from API 20NE | |||
| 82085 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38308.1 | StrainInfo: A central database for resolving microbial strain identifiers |