Strain identifier
BacDive ID: 1286
Type strain: 
Species: Heyndrickxia acidiproducens
Strain Designation: SL213
Strain history: <- YH Chang, KRIBB
NCBI tax ID(s): 444461 (strain), 1121084 (species)
version 8.1 (current version)
General
@ref: 16732
BacDive-ID: 1286
DSM-Number: 23148
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, motile, rod-shaped
description: Heyndrickxia acidiproducens SL213 is an aerobe, spore-forming, mesophilic bacterium that was isolated from vineyard soil.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1121084 | species |
| 444461 | strain |
strain history
| @ref | history |
|---|---|
| 16732 | <- JCM/RIKEN <- Y.-H. Chang, Korea Res. Inst. Biosci. & Biotechnol. (KRIBB), Taejon, South Korea; SL213 |
| 67770 | Y.-H. Chang SL213. |
| 67771 | <- YH Chang, KRIBB |
doi: 10.13145/bacdive1286.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Heyndrickxia
- species: Heyndrickxia acidiproducens
- full scientific name: Heyndrickxia acidiproducens (Jung et al. 2009) Narsing Rao et al. 2023
synonyms
@ref synonym 20215 Bacillus acidiproducens 20215 Weizmannia acidiproducens
@ref: 16732
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Weizmannia
species: Weizmannia acidiproducens
full scientific name: Weizmannia acidiproducens (Jung et al. 2009) Gupta et al. 2020
strain designation: SL213
type strain: yes
Morphology
cell morphology
| @ref | cell shape | motility | flagellum arrangement | gram stain | confidence |
|---|---|---|---|---|---|
| 67771 | rod-shaped | yes | monotrichous, polar | ||
| 67771 | positive | ||||
| 69480 | yes | 94.948 | |||
| 69480 | positive | 100 |
Culture and growth conditions
culture medium
- @ref: 16732
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l MnSO4 Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16732 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
| 67771 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
| @ref | type of spore | spore formation | confidence |
|---|---|---|---|
| 67771 | spore | yes | |
| 69481 | yes | 99 | |
| 69480 | yes | 100 |
metabolite production
- @ref: 67770
- Chebi-ID: 24996
- metabolite: lactate
- production: yes
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 16732 | vineyard soil | Daejeon | Republic of Korea | KOR | Asia |
| 67770 | Vineyard soil in Daejeon | Republic of Korea | KOR | Asia | |
| 67771 | From vineyard soils in Korea | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Vineyard |
| #Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 16732
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16732
- description: Bacillus sp. SL213 16S ribosomal RNA gene, partial sequence
- accession: EF379274
- length: 1415
- database: ena
- NCBI tax ID: 444461
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus acidiproducens DSM 23148 | 444461.3 | wgs | patric | 444461 |
| 66792 | Weizmannia acidiproducens DSM 23148 | 2519899659 | draft | img | 444461 |
| 67770 | Heyndrickxia acidiproducens DSM 23148 | GCA_000374345 | scaffold | ncbi | 444461 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 16732 | 46.3 | high performance liquid chromatography (HPLC) |
| 67771 | 46.3 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 99 | no |
| gram-positive | yes | 87.767 | yes |
| anaerobic | no | 97.401 | yes |
| halophile | yes | 69.625 | no |
| spore-forming | yes | 94.282 | yes |
| glucose-util | yes | 92.024 | no |
| aerobic | yes | 80.144 | yes |
| flagellated | yes | 87.246 | yes |
| thermophile | no | 85.077 | yes |
| motile | yes | 90.042 | no |
| glucose-ferment | no | 77.052 | no |
External links
@ref: 16732
culture collection no.: DSM 23148, JCM 14638, KCTC 13078
straininfo link
- @ref: 70940
- straininfo: 363448
literature
- topic: Phylogeny
- Pubmed-ID: 19605722
- title: Bacillus acidiproducens sp. nov., vineyard soil isolates that produce lactic acid.
- authors: Jung MY, Kim JS, Chang YH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.003913-0
- year: 2009
- mesh: Aerobiosis, Anaerobiosis, Bacillus/*classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, Base Composition, Catalase/metabolism, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Flagella/physiology, Galactose/analysis, Glucose/analysis, Korea, Lactic Acid/*metabolism, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16732 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23148) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23148 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 70940 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID363448.1 | StrainInfo: A central database for resolving microbial strain identifiers |