Strain identifier

BacDive ID: 1285

Type strain: Yes

Species: Fictibacillus solisalsi

Strain Designation: YC1

Strain history: H. Liu YC1.

NCBI tax ID(s): 459525 (species)

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General

@ref: 17956

BacDive-ID: 1285

DSM-Number: 25243

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Fictibacillus solisalsi YC1 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from saline soil.

NCBI tax id

  • NCBI tax id: 459525
  • Matching level: species

strain history

@refhistory
17956<- KCTC <- H. Liu, Nanjing Agric. Univ., China
67770H. Liu YC1.

doi: 10.13145/bacdive1285.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Fictibacillus
  • species: Fictibacillus solisalsi
  • full scientific name: Fictibacillus solisalsi (Liu et al. 2009) Glaeser et al. 2013

  • synonyms

    • @ref: 20215
    • synonym: Bacillus solisalsi

@ref: 17956

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Fictibacillus

species: Fictibacillus solisalsi

full scientific name: Fictibacillus solisalsi (Liu et al. 2009) Glaeser et al. 2013

strain designation: YC1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
28892positive2.75 µm0.9 µmrod-shapedyes
69480yes96.668
69480positive100

pigmentation

  • @ref: 28892
  • production: no

Culture and growth conditions

culture medium

  • @ref: 17956
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17956positivegrowth30mesophilic
28892positivegrowth15-53
28892positiveoptimum38.5mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
28892positivegrowth05-13alkaliphile
28892positiveoptimum8.5

Physiology and metabolism

oxygen tolerance

  • @ref: 28892
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
28892yes
69481yes100
69480yes100

halophily

@refsaltgrowthtested relationconcentration
28892NaClpositivegrowth0-15 %
28892NaClpositiveoptimum7.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2889228757fructose+carbon source
2889229864mannitol+carbon source
2889237684mannose+carbon source
2889217814salicin+carbon source
2889227082trehalose+carbon source
2889253424tween 20+carbon source
2889218222xylose+carbon source
288924853esculin+hydrolysis

enzymes

@refvalueactivityec
28892catalase+1.11.1.6
28892cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17956saline soilShanxi ProvinceChinaCHNAsia
67770Soil from the Yuncheng Salt Lake in the Shanxi ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_129708.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1870;97_3456;98_5986;99_129708&stattab=map
  • Last taxonomy: Fictibacillus solisalsi
  • 16S sequence: EU046268
  • Sequence Identity:
  • Total samples: 84
  • soil counts: 46
  • aquatic counts: 20
  • animal counts: 12
  • plant counts: 6

Safety information

risk assessment

  • @ref: 17956
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17956
  • description: Bacillus solisalsi strain YC1 16S ribosomal RNA gene, partial sequence
  • accession: EU046268
  • length: 1424
  • database: ena
  • NCBI tax ID: 459525

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Fictibacillus solisalsi strain CGMCC 1.6854459525.17wgspatric459525
66792Fictibacillus solisalsi CGMCC 1.68542619618871draftimg459525
67770Fictibacillus solisalsi CGMCC 1.6854GCA_900103485scaffoldncbi459525

GC content

  • @ref: 28892
  • GC-content: 41.8

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes88.762yes
anaerobicno98.469no
halophileno65.716no
spore-formingyes93.417no
glucose-utilyes89.792no
aerobicyes86.513no
flagellatedyes78.774no
motileyes89.224yes
thermophileno95.339yes
glucose-fermentno92.527no

External links

@ref: 17956

culture collection no.: DSM 25243, CGMCC 1.6854, KCTC 13181, JCM 14863, BCRC 80435

straininfo link

  • @ref: 70939
  • straininfo: 362774

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19502335Bacillus solisalsi sp. nov., a halotolerant, alkaliphilic bacterium isolated from soil around a salt lake.Liu H, Zhou Y, Liu R, Zhang KY, Lai RInt J Syst Evol Microbiol10.1099/ijs.0.000653-02009Bacillus/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Fresh Water/*microbiology, Hydrogen-Ion Concentration, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymerase Chain Reaction/methods, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride/metabolism, *Soil Microbiology, Species SpecificityGenetics
Phylogeny23355698Fictibacillus phosphorivorans gen. nov., sp. nov. and proposal to reclassify Bacillus arsenicus, Bacillus barbaricus, Bacillus macauensis, Bacillus nanhaiensis, Bacillus rigui, Bacillus solisalsi and Bacillus gelatini in the genus Fictibacillus.Glaeser SP, Dott W, Busse HJ, Kampfer PInt J Syst Evol Microbiol10.1099/ijs.0.049171-02013Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, Polyamines/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny24343101Fictibacillus enclensis sp. nov., isolated from marine sediment.Dastager SG, Mawlankar R, Srinivasan K, Tang SK, Lee JC, Ramana VV, Shouche YSAntonie Van Leeuwenhoek10.1007/s10482-013-0097-92013Bacillaceae/chemistry/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *SeawaterGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17956Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25243)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25243
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
28892Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2533228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70939Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID362774.1StrainInfo: A central database for resolving microbial strain identifiers