Strain identifier

BacDive ID: 12816

Type strain: No

Species: Pseudomonas chlororaphis subsp. aureofaciens

Strain history: <- ICPB <- NRRL

NCBI tax ID(s): 587851 (subspecies)

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General

@ref: 12642

BacDive-ID: 12816

DSM-Number: 50139

keywords: genome sequence, Bacteria, mesophilic, motile

description: Pseudomonas chlororaphis subsp. aureofaciens DSM 50139 is a mesophilic, motile bacterium that was isolated from farm soil.

NCBI tax id

  • NCBI tax id: 587851
  • Matching level: subspecies

strain history

  • @ref: 12642
  • history: <- ICPB <- NRRL

doi: 10.13145/bacdive12816.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas chlororaphis subsp. aureofaciens
  • full scientific name: Pseudomonas chlororaphis subsp. aureofaciens (Kluyver 1956) Peix et al. 2007

  • synonyms

    • @ref: 20215
    • synonym: Pseudomonas aureofaciens

@ref: 12642

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas chlororaphis subsp. aureofaciens

full scientific name: Pseudomonas chlororaphis subsp. aureofaciens (Kluyver 1956) Peix et al. 2007

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes97.787
6948099.997negative

multimedia

  • @ref: 12642
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_50139.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 12642
  • name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1a
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 12642
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.992

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
12642---+--+-+++++-++-++++/-

Isolation, sampling and environmental information

isolation

  • @ref: 12642
  • sample type: farm soil
  • geographic location: Peoria
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Engineered#Agriculture#Field
#Engineered#Food production#Aquaculture

Safety information

risk assessment

  • @ref: 12642
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas chlororaphis strain ATCC 17415587753.60completepatric587753
66792Pseudomonas chlororaphis ATCC 174152877820159completeimg587753
66792Pseudomonas chlororaphis ATCC 17415GCA_003851145completencbi587753

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes92.498no
flagellatedyes85.676no
gram-positiveno98.243no
anaerobicno98.67no
aerobicyes95.307no
halophileno91.269no
spore-formingno94.608no
thermophileno99.848yes
glucose-utilyes93.652yes
glucose-fermentno90.926yes

External links

@ref: 12642

culture collection no.: DSM 50139, ATCC 17415, ICPB 2717-36, NRRL B-1482 R

straininfo link

  • @ref: 82026
  • straininfo: 3936

Reference

@idauthorscataloguedoi/urltitle
12642Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 50139)https://www.dsmz.de/collection/catalogue/details/culture/DSM-50139
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82026Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3936.1StrainInfo: A central database for resolving microbial strain identifiers