Strain identifier
BacDive ID: 12810
Type strain: 
Species: Pseudomonas carboxydohydrogena
Strain Designation: Z-1062
Strain history: DSM 1083 <-- G. A. Zavarzin Z-1062.
NCBI tax ID(s): 290 (species)
version 8.1 (current version)
General
@ref: 537
BacDive-ID: 12810
DSM-Number: 1083
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Pseudomonas carboxydohydrogena Z-1062 is an aerobe, mesophilic bacterium that was isolated from sewage air tank.
NCBI tax id
- NCBI tax id: 290
- Matching level: species
strain history
| @ref | history |
|---|---|
| 537 | <- G. A. Zavarzin, Institute of Microbiology, Russ. Academy of Sciences, Moscow, Russia; Z-1062 (Seliberia carboxydohydrogena) |
| 67770 | DSM 1083 <-- G. A. Zavarzin Z-1062. |
doi: 10.13145/bacdive12810.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas carboxydohydrogena
- full scientific name: Pseudomonas carboxydohydrogena (ex Sanjieva and Zavarzin 1971) Meyer et al. 1980
@ref: 537
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas carboxydohydrogena
full scientific name: Pseudomonas carboxydohydrogena (ex Sanjieva and Zavarzin 1971) Meyer et al. 1980
strain designation: Z-1062
type strain: yes
Culture and growth conditions
culture medium
- @ref: 537
- name: CARBON MONOXIDE OXIDIZER MEDIUM (DSMZ Medium 133)
- growth: yes
- link: https://mediadive.dsmz.de/medium/133
- composition: Name: CARBON MONOXIDE OXIDIZER MEDIUM (DSMZ Medium 133) Composition: Agar 12.0 g/l Na2HPO4 x 12 H2O 4.5 g/l NH4Cl 1.5 g/l KH2PO4 0.75 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.03 g/l Ferric ammonium citrate 0.018 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 537 | positive | growth | 30 | mesophilic |
| 60053 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 60053
- oxygen tolerance: aerobe
compound production
- @ref: 537
- compound: carbon monoxide dehydrogenase
enzymes
- @ref: 67770
- value: carbon monoxide dehydrogenase
- ec: 1.2.7.4
Isolation, sampling and environmental information
isolation
| @ref | sample type | continent | country | origin.country |
|---|---|---|---|---|
| 537 | sewage air tank | Asia | ||
| 60053 | Sewage air tank | Former USSR | ||
| 67770 | Sewage air tank | Russia | RUS |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Built environment | #Container (Reservoir) |
| #Engineered | #Waste | #Wastewater |
taxonmaps
- @ref: 69479
- File name: preview.99_1530.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_297;97_329;98_1207;99_1530&stattab=map
- Last taxonomy: Afipia
- 16S sequence: AB021393
- Sequence Identity:
- Total samples: 807
- soil counts: 269
- aquatic counts: 275
- animal counts: 203
- plant counts: 60
Safety information
risk assessment
- @ref: 537
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 537
- description: Pseudomonas carboxydohydrogena gene for 16S rRNA, strain: DSM 1083
- accession: AB021393
- length: 1450
- database: ena
- NCBI tax ID: 290
Genome sequences
- @ref: 66792
- description: [Pseudomonas] carboxydohydrogena DSM 1083
- accession: GCA_029030725
- assembly level: complete
- database: ncbi
- NCBI tax ID: 290
GC content
- @ref: 537
- GC-content: 58.2
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 70.687 | no |
| flagellated | no | 92.562 | no |
| gram-positive | no | 87.001 | no |
| anaerobic | no | 96.065 | yes |
| aerobic | yes | 73.796 | yes |
| halophile | no | 77.825 | no |
| spore-forming | no | 96.909 | no |
| glucose-ferment | no | 50.785 | no |
| thermophile | no | 94.411 | no |
| glucose-util | yes | 68.717 | no |
External links
@ref: 537
culture collection no.: DSM 1083, ATCC 29978, CCUG 53884, JCM 12568, VKM B-1334
straininfo link
- @ref: 82020
- straininfo: 39821
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 537 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1083) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1083 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 60053 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 53884) | https://www.ccug.se/strain?id=53884 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 82020 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID39821.1 | StrainInfo: A central database for resolving microbial strain identifiers |