Strain identifier
BacDive ID: 12749
Type strain: 
Species: Azotobacter vinelandii
Strain Designation: 16
Strain history: IAM 15004 <-- LMG 8758 <-- NCIMB 12096 <-- ATCC <-- N. R. Smith 16 <-- J. Lipman.
NCBI tax ID(s): 354 (species)
version 8.1 (current version)
General
@ref: 1021
BacDive-ID: 12749
DSM-Number: 2289
keywords: 16S sequence, Bacteria, mesophilic
description: Azotobacter vinelandii 16 is a mesophilic bacterium of the family Pseudomonadaceae.
NCBI tax id
- NCBI tax id: 354
- Matching level: species
strain history
| @ref | history |
|---|---|
| 1021 | <- ATCC <- N.R. Smith, 16 <- J.G. Lipman |
| 67770 | IAM 15004 <-- LMG 8758 <-- NCIMB 12096 <-- ATCC <-- N. R. Smith 16 <-- J. Lipman. |
doi: 10.13145/bacdive12749.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Azotobacter
- species: Azotobacter vinelandii
- full scientific name: Azotobacter vinelandii Lipman 1903 (Approved Lists 1980)
@ref: 1021
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Azotobacter
species: Azotobacter vinelandii
full scientific name: Azotobacter vinelandii Lipman 1903
strain designation: 16
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1021
- name: DIAZOTROPHIC MEDIUM (RBA) (DSMZ Medium 441)
- growth: yes
- link: https://mediadive.dsmz.de/medium/441
- composition: Name: DIAZOTROPHIC MEDIUM (RBA) (DSMZ Medium 441) Composition: Agar 14.881 g/l DL-Malate 1.98413 g/l D-Glucose 1.98413 g/l D-Mannitol 1.98413 g/l Na-pyruvate 0.992063 g/l Disodium succinate 0.992063 g/l K2HPO4 0.892857 g/l KH2PO4 0.0992065 g/l NaCl 0.0992065 g/l CaCl2 x 2 H2O 0.0992065 g/l MgSO4 x 7 H2O 0.0992065 g/l Yeast extract 0.0496032 g/l FeSO4 x 7 H2O 0.00992065 g/l MnSO4 x H2O 0.00496032 g/l NaVO3 x H2O 0.00496032 g/l Nicotinic acid 0.00248016 g/l Pyridoxine hydrochloride 0.00248016 g/l Calcium pantothenate 0.00248016 g/l Thiamine-HCl x 2 H2O 0.00248016 g/l H3BO3 0.000892857 g/l CoCl2 x 6 H2O 0.000595238 g/l Riboflavin 0.000496032 g/l ZnSO4 x 7 H2O 0.000297619 g/l MnCl2 x 4 H2O 8.92857e-05 g/l Na2MoO4 x 2 H2O 8.92857e-05 g/l NiCl2 x 6 H2O 5.95238e-05 g/l Vitamin B12 4.96032e-05 g/l CuCl2 x 2 H2O 2.97619e-05 g/l Folic acid 9.92063e-06 g/l Biotin 4.96032e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1021 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
- @ref: 1021
- compound: fluorescent pigment
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_2019.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_646;97_1313;98_1582;99_2019&stattab=map
- Last taxonomy: Azotobacter vinelandii
- 16S sequence: EF100155
- Sequence Identity:
- Total samples: 4061
- soil counts: 688
- aquatic counts: 1559
- animal counts: 1425
- plant counts: 389
Safety information
risk assessment
- @ref: 1021
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Azotobacter vinelandii strain ICMP 15215 16S ribosomal RNA gene, partial sequence | EF100155 | 1370 | ena | 354 |
| 20218 | Azotobacter vinelandii gene for 16S rRNA, partial sequence | AB175657 | 1471 | ena | 354 |
| 20218 | Azotobacter vinelandii gene for 16S rRNA, partial sequence, strain: NBRC 102612 | AB681886 | 1461 | ena | 354 |
| 20218 | Bacillus thuringiensis strain INRS16 16S ribosomal RNA gene, partial sequence | FJ601912 | 873 | ena | 1428 |
External links
@ref: 1021
culture collection no.: DSM 2289, ATCC 478, VKM B-1617, JCM 21475, ATCC 8372, BCRC 14361, CECT 9205, IAM 15004, ICMP 15215, KCTC 12137, LMD 26.7, LMG 8758, NBRC 102612, NCCB 26007, NCIMB 12096, NRRL B-14641
straininfo link
- @ref: 81958
- straininfo: 1088
literature
- topic: Metabolism
- Pubmed-ID: 8631324
- title: Redox properties of wild-type, Cys69Ala, and Cys69Ser Azotobacter vinelandii flavodoxin II as measured by cyclic voltammetry and EPR spectroscopy,.
- authors: Steensma E, Heering HA, Hagen WR, Van Mierlo CP
- journal: Eur J Biochem
- DOI: 10.1111/j.1432-1033.1996.00167.x
- year: 1996
- mesh: Azotobacter vinelandii/genetics/*metabolism, Electrochemistry, Electron Spin Resonance Spectroscopy, Escherichia coli/genetics, Flavodoxin/*chemistry/genetics/*metabolism, Hydrogen-Ion Concentration, Kinetics, Models, Chemical, Molecular Structure, Oxidation-Reduction, Point Mutation
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1021 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2289) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2289 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 81958 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1088.1 | StrainInfo: A central database for resolving microbial strain identifiers |