Strain identifier

BacDive ID: 12712

Type strain: Yes

Species: Cellvibrio ostraviensis

Strain history: <- LMG <- J. Margaert, Univ. Ghent, Belgium <- D. Lednická, Univ. Ostrava

NCBI tax ID(s): 200905 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6524

BacDive-ID: 12712

DSM-Number: 16616

keywords: 16S sequence, Bacteria, mesophilic

description: Cellvibrio ostraviensis DSM 16616 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 200905
  • Matching level: species

strain history

  • @ref: 6524
  • history: <- LMG <- J. Margaert, Univ. Ghent, Belgium <- D. Lednická, Univ. Ostrava

doi: 10.13145/bacdive12712.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Cellvibrionales
  • family: Cellvibrionaceae
  • genus: Cellvibrio
  • species: Cellvibrio ostraviensis
  • full scientific name: Cellvibrio ostraviensis Mergaert et al. 2003

@ref: 6524

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Cellvibrionaceae

genus: Cellvibrio

species: Cellvibrio ostraviensis

full scientific name: Cellvibrio ostraviensis Mergaert et al. 2003

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6524CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
6524R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 6524
  • growth: positive
  • type: growth
  • temperature: 28

Isolation, sampling and environmental information

isolation

  • @ref: 6524
  • sample type: soil
  • country: Czech Republic
  • origin.country: CZE
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 6524
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Cellvibrio ostraviensis partial 16S rRNA gene, type strain LMG 19434T
  • accession: AJ493583
  • length: 1469
  • database: nuccore
  • NCBI tax ID: 200905

GC content

  • @ref: 6524
  • GC-content: 48.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 6524

culture collection no.: DSM 16616, ACM 5173, LMG 19434

straininfo link

  • @ref: 81921
  • straininfo: 13120

literature

  • topic: Phylogeny
  • Pubmed-ID: 12710614
  • title: Taxonomic study of Cellvibrio strains and description of Cellvibrio ostraviensis sp. nov., Cellvibrio fibrivorans sp. nov. and Cellvibrio gandavensis sp. nov.
  • authors: Mergaert J, Lednicka D, Goris J, Cnockaert MC, De Vos P, Swings J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02316-0
  • year: 2003
  • mesh: Cellvibrio/*classification/genetics/physiology, Fatty Acids/analysis, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/*analysis/genetics, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6524Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16616)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16616
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
81921Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13120.1StrainInfo: A central database for resolving microbial strain identifiers