Strain identifier
BacDive ID: 12712
Type strain:
Species: Cellvibrio ostraviensis
Strain history: <- LMG <- J. Margaert, Univ. Ghent, Belgium <- D. Lednická, Univ. Ostrava
NCBI tax ID(s): 200905 (species)
version 9.2 (current version)
General
@ref: 6524
BacDive-ID: 12712
DSM-Number: 16616
keywords: 16S sequence, Bacteria, mesophilic
description: Cellvibrio ostraviensis DSM 16616 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 200905
- Matching level: species
strain history
- @ref: 6524
- history: <- LMG <- J. Margaert, Univ. Ghent, Belgium <- D. Lednická, Univ. Ostrava
doi: 10.13145/bacdive12712.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Cellvibrionales
- family: Cellvibrionaceae
- genus: Cellvibrio
- species: Cellvibrio ostraviensis
- full scientific name: Cellvibrio ostraviensis Mergaert et al. 2003
@ref: 6524
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Cellvibrionaceae
genus: Cellvibrio
species: Cellvibrio ostraviensis
full scientific name: Cellvibrio ostraviensis Mergaert et al. 2003
type strain: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6524 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
6524 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
culture temp
- @ref: 6524
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 6524
- sample type: soil
- country: Czech Republic
- origin.country: CZE
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 6524
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Cellvibrio ostraviensis partial 16S rRNA gene, type strain LMG 19434T
- accession: AJ493583
- length: 1469
- database: nuccore
- NCBI tax ID: 200905
GC content
- @ref: 6524
- GC-content: 48.4
- method: high performance liquid chromatography (HPLC)
External links
@ref: 6524
culture collection no.: DSM 16616, ACM 5173, LMG 19434
straininfo link
- @ref: 81921
- straininfo: 13120
literature
- topic: Phylogeny
- Pubmed-ID: 12710614
- title: Taxonomic study of Cellvibrio strains and description of Cellvibrio ostraviensis sp. nov., Cellvibrio fibrivorans sp. nov. and Cellvibrio gandavensis sp. nov.
- authors: Mergaert J, Lednicka D, Goris J, Cnockaert MC, De Vos P, Swings J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.02316-0
- year: 2003
- mesh: Cellvibrio/*classification/genetics/physiology, Fatty Acids/analysis, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/*analysis/genetics, *Soil Microbiology
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
6524 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16616) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16616 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
81921 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13120.1 | StrainInfo: A central database for resolving microbial strain identifiers |