Strain identifier
BacDive ID: 12701
Type strain: 
Species: Pseudoalteromonas arctica
Strain Designation: A 37-1-2
Strain history: <- R. Al Khudary and G. Antranikian, Hamburg Univ. Technol., Germany; A 37-1-2 <- T. Grudieva
NCBI tax ID(s): 394751 (species)
version 8.1 (current version)
General
@ref: 7470
BacDive-ID: 12701
DSM-Number: 18437
keywords: genome sequence, 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative, motile, rod-shaped
description: Pseudoalteromonas arctica A 37-1-2 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from arctic seawater.
NCBI tax id
- NCBI tax id: 394751
- Matching level: species
strain history
- @ref: 7470
- history: <- R. Al Khudary and G. Antranikian, Hamburg Univ. Technol., Germany; A 37-1-2 <- T. Grudieva
doi: 10.13145/bacdive12701.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Pseudoalteromonadaceae
- genus: Pseudoalteromonas
- species: Pseudoalteromonas arctica
- full scientific name: Pseudoalteromonas arctica Al Khudary et al. 2008
@ref: 7470
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas arctica
full scientific name: Pseudoalteromonas arctica Al Khudary et al. 2008
strain designation: A 37-1-2
type strain: yes
Morphology
cell morphology
- @ref: 32098
- gram stain: negative
- cell length: 0.4-0.7 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 32098
- production: yes
Culture and growth conditions
culture medium
- @ref: 7470
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7470 | positive | growth | 20 | psychrophilic |
| 32098 | positive | growth | 04-25 | |
| 32098 | positive | optimum | 10-15 | psychrophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 32098 | positive | growth | 06-08 |
| 32098 | positive | optimum | 07-08 |
Physiology and metabolism
oxygen tolerance
- @ref: 32098
- oxygen tolerance: aerobe
spore formation
- @ref: 32098
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32098 | NaCl | positive | growth | 0-9 % |
| 32098 | NaCl | positive | optimum | 02-03 % |
observation
- @ref: 32098
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32098 | 16449 | alanine | + | carbon source |
| 32098 | 27689 | decanoate | + | carbon source |
| 32098 | 17057 | cellobiose | + | carbon source |
| 32098 | 23652 | dextrin | + | carbon source |
| 32098 | 28260 | galactose | + | carbon source |
| 32098 | 24265 | gluconate | + | carbon source |
| 32098 | 17234 | glucose | + | carbon source |
| 32098 | 17306 | maltose | + | carbon source |
| 32098 | 29864 | mannitol | + | carbon source |
| 32098 | 28053 | melibiose | + | carbon source |
| 32098 | 51850 | methyl pyruvate | + | carbon source |
| 32098 | 17992 | sucrose | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 7470
- sample type: arctic seawater
- geographic location: Spitzbergen
- country: Norway
- origin.country: NOR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | |
| #Condition | #Psychrophilic (<10°C) | |
| #Climate | #Cold | #Polar |
Safety information
risk assessment
- @ref: 7470
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7470
- description: Pseudoalteromonas arctica strain A 37-1-2 16S ribosomal RNA gene, partial sequence
- accession: DQ787199
- length: 1499
- database: ena
- NCBI tax ID: 394751
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudoalteromonas arctica A 37-1-2 | GCA_000238395 | complete | ncbi | 1117313 |
| 66792 | Pseudoalteromonas arctica A 37-1-2 | 1117313.12 | plasmid | patric | 1117313 |
| 66792 | Pseudoalteromonas arctica A 37-1-2 | 1117313.3 | wgs | patric | 1117313 |
| 66792 | Pseudoalteromonas arctica A 37-1-2 | 2775507288 | complete | img | 1117313 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 7470 | 39 | high performance liquid chromatography (HPLC) |
| 32098 | 39 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 90.75 | yes |
| motile | yes | 90.75 | yes |
| flagellated | yes | 81.229 | no |
| flagellated | yes | 81.229 | no |
| gram-positive | no | 99.233 | no |
| gram-positive | no | 99.233 | no |
| anaerobic | no | 97.477 | no |
| anaerobic | no | 97.477 | no |
| aerobic | yes | 83.817 | yes |
| aerobic | yes | 83.817 | yes |
| halophile | yes | 56.18 | no |
| halophile | yes | 56.18 | no |
| spore-forming | no | 96.027 | yes |
| spore-forming | no | 96.027 | yes |
| thermophile | no | 99.51 | yes |
| glucose-util | yes | 93.362 | yes |
| glucose-util | yes | 93.362 | yes |
| thermophile | no | 99.51 | yes |
| glucose-ferment | no | 79.127 | no |
| glucose-ferment | no | 79.127 | no |
External links
@ref: 7470
culture collection no.: DSM 18437, LMG 23753
straininfo link
- @ref: 81911
- straininfo: 291688
literature
- topic: Phylogeny
- Pubmed-ID: 18768597
- title: Pseudoalteromonas arctica sp. nov., an aerobic, psychrotolerant, marine bacterium isolated from Spitzbergen.
- authors: Al Khudary R, Stosser NI, Qoura F, Antranikian G
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64963-0
- year: 2008
- mesh: Anaerobiosis, Arctic Regions, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, Carboxylic Acids/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella, Genes, rRNA, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pseudoalteromonas/*classification/genetics/*isolation & purification/physiology, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Temperature
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 7470 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18437) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18437 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 32098 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28343 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 81911 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID291688.1 | StrainInfo: A central database for resolving microbial strain identifiers |