Strain identifier
BacDive ID: 12700
Type strain: 
Species: Pseudoalteromonas marina
Strain Designation: mano4, 31.101
Strain history: <- JW Bae, KRIBB
NCBI tax ID(s): 1117316 (strain), 267375 (species)
version 9.3 (current version)
General
@ref: 7074
BacDive-ID: 12700
DSM-Number: 17587
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Pseudoalteromonas marina mano4 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from tidal flat sediment.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 267375 | species |
| 1117316 | strain |
strain history
| @ref | history |
|---|---|
| 7074 | <- J.-W. Bae, KRIBB; mano4 |
| 67771 | <- JW Bae, KRIBB |
doi: 10.13145/bacdive12700.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Pseudoalteromonadaceae
- genus: Pseudoalteromonas
- species: Pseudoalteromonas marina
- full scientific name: Pseudoalteromonas marina Nam et al. 2007
@ref: 7074
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas marina
full scientific name: Pseudoalteromonas marina Nam et al. 2007
strain designation: mano4, 31.101
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 67771 | negative | |
| 125438 | negative | 100 |
| 125439 | negative | 99.8 |
Culture and growth conditions
culture medium
- @ref: 7074
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 40.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 7074 | positive | growth | 25 |
| 67771 | positive | growth | 25 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 67771 | aerobe | |
| 125439 | obligate aerobe | 97.9 |
spore formation
- @ref: 125439
- spore formation: no
- confidence: 99.7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7074 | tidal flat sediment | Chung-Nam, Dae-Chun | Republic of Korea | KOR | Asia |
| 67771 | From west sea | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Tidal flat |
| #Environmental | #Terrestrial | #Sediment |
Safety information
risk assessment
- @ref: 7074
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7074
- description: Pseudoalteromonas marina strain mano4 16S ribosomal RNA gene, partial sequence
- accession: AY563031
- length: 1371
- database: nuccore
- NCBI tax ID: 267375
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudoalteromonas marina DSM 17587 | GCA_000238335 | chromosome | ncbi | 267375 |
| 66792 | Pseudoalteromonas marina mano4 | 1117316.3 | wgs | patric | 1117316 |
| 66792 | Pseudoalteromonas marina mano4 | 2541047158 | draft | img | 1117316 |
GC content
- @ref: 7074
- GC-content: 41.2
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 97.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.8 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 59.4 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.7 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | yes |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.788 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 75.333 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 88.726 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97.944 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 87.088 | no |
External links
@ref: 7074
culture collection no.: DSM 17587, KCTC 12242
straininfo link
- @ref: 81910
- straininfo: 232782
literature
- topic: Phylogeny
- Pubmed-ID: 17220433
- title: Pseudoalteromonas marina sp. nov., a marine bacterium isolated from tidal flats of the Yellow Sea, and reclassification of Pseudoalteromonas sagamiensis as Algicola sagamiensis comb. nov.
- authors: Nam YD, Chang HW, Park JR, Kwon HY, Quan ZX, Park YH, Lee JS, Yoon JH, Bae JW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64523-0
- year: 2007
- mesh: DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Geologic Sediments/*microbiology, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Pseudoalteromonas/*classification/genetics/*isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7074 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17587) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17587 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 81910 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID232782.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |