Strain identifier
BacDive ID: 12698
Type strain: 
Species: Pseudoalteromonas spiralis
Strain Designation: Te-2-2
Strain history: <- V. Yurkov; Te-2-2
NCBI tax ID(s): 162157 (species)
version 9.3 (current version)
General
@ref: 6294
BacDive-ID: 12698
DSM-Number: 16099
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Pseudoalteromonas spiralis Te-2-2 is a mesophilic, Gram-negative bacterium that was isolated from near deep ocean hydrothermal vent.
NCBI tax id
- NCBI tax id: 162157
- Matching level: species
strain history
- @ref: 6294
- history: <- V. Yurkov; Te-2-2
doi: 10.13145/bacdive12698.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Pseudoalteromonadaceae
- genus: Pseudoalteromonas
- species: Pseudoalteromonas spiralis
- full scientific name: Pseudoalteromonas spiralis Rathgeber et al. 2006
@ref: 6294
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas spiralis
full scientific name: Pseudoalteromonas spiralis Rathgeber et al. 2006
strain designation: Te-2-2
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 100 |
| 125439 | negative | 97 |
Culture and growth conditions
culture medium
- @ref: 6294
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Sodium acetate 1.0 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 6294
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 99.3
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 91.06 |
| 125439 | no | 98.7 |
Isolation, sampling and environmental information
isolation
- @ref: 6294
- sample type: near deep ocean hydrothermal vent
- geographic location: Pacific Ocean, Juan de Fuca Ridge
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Environmental | #Aquatic | #Marine |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_1002.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_57;96_122;97_129;98_145;99_1002&stattab=map
- Last taxonomy: Pseudoalteromonas
- 16S sequence: AJ314842
- Sequence Identity:
- Total samples: 3222
- soil counts: 24
- aquatic counts: 2792
- animal counts: 384
- plant counts: 22
Sequence information
16S sequences
- @ref: 6294
- description: Pseudoalteromonas sp. TE2-2 16S rRNA gene, strain TE2-2
- accession: AJ314842
- length: 1468
- database: nuccore
- NCBI tax ID: 162157
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudoalteromonas spiralis DSM 16099 | GCA_001596815 | contig | ncbi | 162157 |
| 66792 | Pseudoalteromonas spiralis strain DSM 16099 | 162157.3 | wgs | patric | 162157 |
| 66792 | Pseudoalteromonas spiralis DSM 16099 | 2675903427 | draft | img | 162157 |
GC content
- @ref: 6294
- GC-content: 39.6
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.401 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.06 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 76.073 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 100 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 89.631 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 64.1 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 97 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.3 |
External links
@ref: 6294
culture collection no.: DSM 16099, VKM B-2383
literature
- topic: Phylogeny
- Pubmed-ID: 17066332
- title: Metalloid reducing bacteria isolated from deep ocean hydrothermal vents of the Juan de Fuca Ridge, Pseudoalteromonas telluritireducens sp. nov. and Pseudoalteromonas spiralis sp. nov.
- authors: Rathgeber C, Yurkova N, Stackebrandt E, Schumann P, Humphrey E, Beatty JT, Yurkov V
- journal: Curr Microbiol
- DOI: 10.1007/s00284-006-0320-2
- year: 2006
- mesh: Base Sequence, DNA, Bacterial/analysis, Molecular Sequence Data, Phylogeny, Pseudoalteromonas/*classification/physiology/ultrastructure, Sodium Selenite/*metabolism, Tellurium/*metabolism
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6294 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16099) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16099 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |