Strain identifier
BacDive ID: 12697
Type strain: 
Species: Pseudoalteromonas telluritireducens
Strain Designation: Se-1-2-red
Strain history: <- V. Yurkov; Se-1-2-red
NCBI tax ID(s): 162160 (species)
version 8.1 (current version)
General
@ref: 6293
BacDive-ID: 12697
DSM-Number: 16098
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Pseudoalteromonas telluritireducens Se-1-2-red is a mesophilic, motile bacterium that was isolated from near deep ocean hydrothermal vent.
NCBI tax id
- NCBI tax id: 162160
- Matching level: species
strain history
- @ref: 6293
- history: <- V. Yurkov; Se-1-2-red
doi: 10.13145/bacdive12697.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Pseudoalteromonadaceae
- genus: Pseudoalteromonas
- species: Pseudoalteromonas telluritireducens
- full scientific name: Pseudoalteromonas telluritireducens Rathgeber et al. 2006
@ref: 6293
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas telluritireducens
full scientific name: Pseudoalteromonas telluritireducens Rathgeber et al. 2006
strain designation: Se-1-2-red
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 98.356 | |
| 69480 | 99.997 | negative |
Culture and growth conditions
culture medium
- @ref: 6293
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l Na acetate 10.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 6293
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.992 |
Isolation, sampling and environmental information
isolation
- @ref: 6293
- sample type: near deep ocean hydrothermal vent
- geographic location: Pacific Ocean, Juan de Fuca Ridge
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Environmental | #Aquatic | #Marine |
| #Condition | #Thermophilic (>45°C) |
Sequence information
16S sequences
- @ref: 6293
- description: Pseudoalteromonas sp. SE1-2red 16S rRNA gene, strain SE1-2red
- accession: AJ314845
- length: 1503
- database: ena
- NCBI tax ID: 162160
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudoalteromonas telluritireducens DSM 16098 | GCA_001596795 | contig | ncbi | 162160 |
| 66792 | Pseudoalteromonas telluritireducens strain DSM 16098 | 162160.3 | wgs | patric | 162160 |
| 66792 | Pseudoalteromonas telluritireducens DSM 16098 | 2724679213 | draft | img | 162160 |
GC content
- @ref: 6293
- GC-content: 39.9
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 92.452 | no |
| gram-positive | no | 99.001 | no |
| anaerobic | no | 97.848 | no |
| aerobic | yes | 91.045 | no |
| halophile | yes | 65.256 | no |
| spore-forming | no | 95.527 | no |
| thermophile | no | 99.25 | yes |
| glucose-util | yes | 93.435 | no |
| flagellated | yes | 87.569 | no |
| glucose-ferment | no | 78.582 | no |
External links
@ref: 6293
culture collection no.: DSM 16098, VKM B-2382
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 17066332 | Metalloid reducing bacteria isolated from deep ocean hydrothermal vents of the Juan de Fuca Ridge, Pseudoalteromonas telluritireducens sp. nov. and Pseudoalteromonas spiralis sp. nov. | Rathgeber C, Yurkova N, Stackebrandt E, Schumann P, Humphrey E, Beatty JT, Yurkov V | Curr Microbiol | 10.1007/s00284-006-0320-2 | 2006 | Base Sequence, DNA, Bacterial/analysis, Molecular Sequence Data, Phylogeny, Pseudoalteromonas/*classification/physiology/ultrastructure, Sodium Selenite/*metabolism, Tellurium/*metabolism | Genetics |
| Genetics | 27563045 | Draft Genome Sequences of Pseudoalteromonas telluritireducens DSM 16098 and P. spiralis DSM 16099 Isolated from the Hydrothermal Vents of the Juan de Fuca Ridge. | Zhang H, Liu R, Wang M, Wang H, Gao Q, Hou Z, Zhou Z, Gao D, Wang L | Genome Announc | 10.1128/genomeA.00871-16 | 2016 | Phylogeny |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6293 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16098) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16098 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 |