Strain identifier

BacDive ID: 12696

Type strain: Yes

Species: Pseudoalteromonas issachenkonii

Strain history: CIP <- 2000, E.P. Ivanova, Russian Academy Sci., Vladivostok, Russia

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6188

BacDive-ID: 12696

DSM-Number: 15925

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, psychrophilic, Gram-negative, motile, rod-shaped

description: Pseudoalteromonas issachenkonii DSM 15925 is an obligate aerobe, psychrophilic, Gram-negative bacterium that was isolated from thallus of the brown alga Fucus evanescens.

NCBI tax id

NCBI tax idMatching level
152297species
1315274strain

strain history

@refhistory
6188<- E. P. Ivanova, Swinburne Univ. Technol., IRIS, Hawthorn, Australia; KMM 3549
420392000, E.P. Ivanova, Russian Academy Sci., Vladivostok, Russia.
120288CIP <- 2000, E.P. Ivanova, Russian Academy Sci., Vladivostok, Russia

doi: 10.13145/bacdive12696.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Pseudoalteromonadaceae
  • genus: Pseudoalteromonas
  • species: Pseudoalteromonas issachenkonii
  • full scientific name: Pseudoalteromonas issachenkonii Ivanova et al. 2002

@ref: 6188

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas issachenkonii

full scientific name: Pseudoalteromonas issachenkonii Ivanova et al. 2002

type strain: yes

Morphology

cell morphology

  • @ref: 120288
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6188BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
42039Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
120288CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
6188positivegrowth22psychrophilic
42039positivegrowth25mesophilic
120288positivegrowth5-37
120288nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 120288
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
120288NaClpositivegrowth2-10 %
120288NaClnogrowth0 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1202884853esculin+hydrolysis
12028817632nitrate+reduction
12028816301nitrite-reduction
12028817632nitrate-respiration

antibiotic resistance

  • @ref: 120288
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 120288
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
120288oxidase+
120288beta-galactosidase-3.2.1.23
120288alcohol dehydrogenase-1.1.1.1
120288gelatinase+
120288amylase-
120288caseinase+3.4.21.50
120288catalase+1.11.1.6
120288tween esterase+
120288lecithinase+
120288lipase+
120288lysine decarboxylase-4.1.1.18
120288ornithine decarboxylase-4.1.1.17
120288protease+
120288tryptophan deaminase-
120288urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120288-+++-++-+-++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120288+--+---+-++-------+--+---------------------------+---------+-------------------++-----+-+--+-++-+--

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentisolation date
6188thallus of the brown alga Fucus evanescensFucus evanescensPacific Ocean, Kurile Islands (Kraternaya Bight)RussiaRUSAsia
120288Plant, Alga Fucus evanescensKraternaya bight, Kuril IslandsRussian FederationRUSEurope1999

isolation source categories

  • Cat1: #Host
  • Cat2: #Algae
  • Cat3: #Brown Algae

taxonmaps

  • @ref: 69479
  • File name: preview.99_1002.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_57;96_122;97_129;98_145;99_1002&stattab=map
  • Last taxonomy: Pseudoalteromonas
  • 16S sequence: AF316144
  • Sequence Identity:
  • Total samples: 3222
  • soil counts: 24
  • aquatic counts: 2792
  • animal counts: 384
  • plant counts: 22

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
61881Risk group (German classification)
1202882Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6188
  • description: Pseudoalteromonas issachenkonii strain KMM 3549 16S ribosomal RNA gene, partial sequence
  • accession: AF316144
  • length: 1446
  • database: ena
  • NCBI tax ID: 152297

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudoalteromonas issachenkonii KMM 3549GCA_002310795completencbi152297
66792Pseudoalteromonas issachenkonii strain KMM 3549152297.5completepatric152297
66792Pseudoalteromonas issachenkonii KMM 35492802429664completeimg1315274

External links

@ref: 6188

culture collection no.: DSM 15925, CIP 106858, LMG 19697, KMM 3549

straininfo link

  • @ref: 81908
  • straininfo: 13467

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11837307Pseudoalteromonas issachenkonii sp. nov., a bacterium that degrades the thallus of the brown alga Fucus evanescens.Ivanova EP, Sawabe T, Alexeeva YV, Lysenko AM, Gorshkova NM, Hayashi K, Zukova NV, Christen R, Mikhailov VVInt J Syst Evol Microbiol10.1099/00207713-52-1-2292002Gammaproteobacteria/*classification/*genetics/metabolism, Genes, rRNA, Molecular Sequence Data, Phaeophyta/metabolism/*microbiology, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater, Sequence Analysis, DNAMetabolism
Cultivation12358700Optimization of glycosidases production by Pseudoalteromonas issachenkonii KMM 3549(T).Alexeeva YV, Ivanova EP, Bakunina IY, Zvaygintseva TN, Mikhailov VVLett Appl Microbiol10.1046/j.1472-765x.2002.01189.x2002Culture Media, Glucan Endo-1,3-beta-D-Glucosidase, Glycoside Hydrolases/*biosynthesis, *Polysaccharide-Lyases, Polysaccharides/*metabolism, Pseudoalteromonas/*enzymology/growth & development, Xylose/administration & dosage/*metabolismMetabolism
Cultivation14687213Impact of cultivation conditions on haemolytic activity of Pseudoalteromonas issachenkonii KMM 3549T.Alexeeva YV, Kalinovskaya NI, Kuznetsova TA, Ivanova EPLett Appl Microbiol10.1046/j.1472-765x.2003.01440.x2004Animals, Bacterial Proteins/biosynthesis, Calcium Chloride, Chymotrypsin, Culture Media/chemistry, Edetic Acid, Erythrocytes/metabolism, Hemolysin Proteins/*biosynthesis, *Hemolysis, Humans, Iron, Mice, Pseudoalteromonas/*enzymology/*physiology, Rabbits, TemperaturePathogenicity
Phylogeny15261592The complete structure of the lipooligosaccharide from the halophilic bacterium Pseudoalteromonas issachenkonii KMM 3549T.Silipo A, Leone S, Lanzetta R, Parrilli M, Sturiale L, Garozzo D, Nazarenko EL, Gorshkova RP, Ivanova EP, Gorshkova NM, Molinaro ACarbohydr Res10.1016/j.carres.2004.05.0082004Bacillaceae/*chemistry, Carbohydrate Conformation, Carbohydrate Sequence, Lipopolysaccharides/*chemistry/isolation & purification, Magnetic Resonance Spectroscopy, Molecular Sequence Data, Pseudoalteromonas/*chemistry/classification, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods, Substrate SpecificityGenetics
Genetics26732413Complete genome of brown algal polysaccharides-degrading Pseudoalteromonas issachenkonii KCTC 12958(T) (=KMM 3549(T)).Lee SH, Choe H, Kim SG, Park DS, Nasir A, Kim BK, Kim KMJ Biotechnol10.1016/j.jbiotec.2015.12.0312015Base Composition, Fucus/microbiology, Genome Size, *Genome, Bacterial, Polysaccharides/*metabolism, Pseudoalteromonas/*genetics/isolation & purification/metabolismMetabolism

Reference

@idauthorscataloguedoi/urltitle
6188Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15925)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15925
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
42039Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/19035
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81908Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13467.1StrainInfo: A central database for resolving microbial strain identifiers
120288Curators of the CIPCollection of Institut Pasteur (CIP 106858)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106858