Strain identifier

BacDive ID: 12695

Type strain: Yes

Species: Pseudoalteromonas mariniglutinosa

Strain history: CIP <- 2003, NCIMB

NCBI tax ID(s): 1315277 (strain), 206042 (species)

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General

@ref: 5756

BacDive-ID: 12695

DSM-Number: 15203

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Pseudoalteromonas mariniglutinosa DSM 15203 is a mesophilic, Gram-negative, motile bacterium that was isolated from diatom Chaetoceros lauderi.

NCBI tax id

NCBI tax idMatching level
206042species
1315277strain

strain history

@refhistory
5756<- L. A. Romanenko <- NCIMB 1770 (Alteromonas marinoglutinosa)
420462003, NCIMB
120804CIP <- 2003, NCIMB

doi: 10.13145/bacdive12695.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Pseudoalteromonadaceae
  • genus: Pseudoalteromonas
  • species: Pseudoalteromonas mariniglutinosa
  • full scientific name: Pseudoalteromonas mariniglutinosa (ex Berland et al. 1969) Romanenko et al. 2003

@ref: 5756

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas mariniglutinosa

full scientific name: Pseudoalteromonas mariniglutinosa (ex Berland et al. 1969) Romanenko et al. 2003

type strain: yes

Morphology

cell morphology

  • @ref: 120804
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5756BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
42046Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
120804CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13
120804CIP Medium 117yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=117

culture temp

@refgrowthtypetemperaturerange
5756positivegrowth25mesophilic
42046positivegrowth25mesophilic
120804positivegrowth5-30
120804nogrowth37mesophilic
120804nogrowth41thermophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
120804NaClpositivegrowth2-8 %
120804NaClnogrowth0 %
120804NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1208044853esculin+hydrolysis
12080417632nitrate-reduction
12080416301nitrite-reduction
12080417632nitrate-respiration

metabolite production

  • @ref: 120804
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
120804oxidase+
120804beta-galactosidase-3.2.1.23
120804alcohol dehydrogenase-1.1.1.1
120804gelatinase+
120804amylase+
120804caseinase+3.4.21.50
120804catalase+1.11.1.6
120804tween esterase+
120804lecithinase+
120804lipase-
120804lysine decarboxylase-4.1.1.18
120804ornithine decarboxylase-4.1.1.17
120804protease+
120804tryptophan deaminase-
120804urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120804-+++-++-+-++-----+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120804+++----+-++----++-+-++-+---------+---------------++--+++---+---------------+---++-----+---++-++-++-

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
5756diatom Chaetoceros lauderiChaetoceros lauderiMarseille GulfFranceFRAEurope
120804Other, Diatom Chaetoceros lauderi collected from sea waterMarseille gulfFranceFRAEurope

isolation source categories

  • Cat1: #Host
  • Cat2: #Algae

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
57561Risk group (German classification)
1208041Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5756
  • description: Pseudoalteromonas sp. KMM 3635 16S rRNA gene, strain KMM 3635
  • accession: AJ507251
  • length: 1483
  • database: ena
  • NCBI tax ID: 206042

Genome sequences

  • @ref: 66792
  • description: Pseudoalteromonas mariniglutinosa NCIMB 1770
  • accession: GCA_021613355
  • assembly level: chromosome
  • database: ncbi
  • NCBI tax ID: 1315277

GC content

  • @ref: 5756
  • GC-content: 40.3

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes90.127no
gram-positiveno98.981no
anaerobicno97.681no
aerobicyes90.303no
halophileno57.537no
spore-formingno95.016no
motileyes92.515no
glucose-fermentno71.446no
thermophileno99.584yes
glucose-utilyes90.052no

External links

@ref: 5756

culture collection no.: DSM 15203, KMM 3635, NCIMB 1770, CIP 108079

straininfo link

  • @ref: 81907
  • straininfo: 875

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12892134Assignment of 'Alteromonas marinoglutinosa' NCIMB 1770 to Pseudoalteromonas mariniglutinosa sp. nov., nom. rev., comb. nov.Romanenko LA, Zhukova NV, Lysenko AM, Mikhailov VV, Stackebrandt EInt J Syst Evol Microbiol10.1099/ijs.0.02564-02003Alteromonas/*classification/genetics/metabolism, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phenotype, Phylogeny, Pseudoalteromonas/*classification/genetics/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Terminology as TopicMetabolism
Phylogeny20228210Pseudoalteromonas donghaensis sp. nov., isolated from seawater.Oh YS, Park AR, Lee JK, Lim CS, Yoo JS, Roh DHInt J Syst Evol Microbiol10.1099/ijs.0.022541-02010Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phenotype, *Phylogeny, Pseudoalteromonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, *Water MicrobiologyGenetics

Reference

@idauthorscataloguedoi/urltitle
5756Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15203)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15203
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
42046Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5661
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
81907Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID875.1StrainInfo: A central database for resolving microbial strain identifiers
120804Curators of the CIPCollection of Institut Pasteur (CIP 108079)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108079