Strain identifier

BacDive ID: 12691

Type strain: Yes

Species: Pseudoalteromonas translucida

Strain history: CIP <- 2002, E. Ivanova, Swinburne Inst., Victoria, Australia

NCBI tax ID(s): 1315283 (strain), 166935 (species)

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General

@ref: 5339

BacDive-ID: 12691

DSM-Number: 14402

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, motile

description: Pseudoalteromonas translucida DSM 14402 is an obligate aerobe, mesophilic, motile bacterium that was isolated from sea water.

NCBI tax id

NCBI tax idMatching level
166935species
1315283strain

strain history

@refhistory
5339<- E. P. Ivanova, Swinburne Univ. of Technol., IRIS, Australia
420442002, E. Ivanova, Swinburne Inst., Victoria, Australia
123574CIP <- 2002, E. Ivanova, Swinburne Inst., Victoria, Australia

doi: 10.13145/bacdive12691.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Pseudoalteromonadaceae
  • genus: Pseudoalteromonas
  • species: Pseudoalteromonas translucida
  • full scientific name: Pseudoalteromonas translucida Ivanova et al. 2002

@ref: 5339

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas translucida

full scientific name: Pseudoalteromonas translucida Ivanova et al. 2002

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes99.131
6948099.987negative
123574nonegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5339BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
42044Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
123574CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
5339positivegrowth28mesophilic
42044positivegrowth25mesophilic
123574positivegrowth5-30
123574nogrowth37mesophilic
123574nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 123574
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.941

halophily

@refsaltgrowthtested relationconcentration
123574NaClpositivegrowth2-8 %
123574NaClnogrowth0 %
123574NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1235744853esculin-hydrolysis
12357417632nitrate-reduction
12357416301nitrite-reduction
12357417632nitrate-respiration

metabolite production

  • @ref: 123574
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
123574oxidase+
123574beta-galactosidase-3.2.1.23
123574alcohol dehydrogenase-1.1.1.1
123574gelatinase+
123574amylase-
123574caseinase+3.4.21.50
123574catalase+1.11.1.6
123574tween esterase+
123574lysine decarboxylase-4.1.1.18
123574ornithine decarboxylase-4.1.1.17
123574tryptophan deaminase-
123574urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123574-+++-+----++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123574+-++-----++---------------------++---------------++--+-----++------------------++---------++-++-++-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
5339sea waterSea of JapanRussiaRUSAsia
123574Environment, SeawaterJapanJPNAsia1997

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
53391Risk group (German classification)
1235741Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5339
  • description: Pseudoalteromonas sp. KMM 520 16S ribosomal RNA gene, partial sequence
  • accession: AY040230
  • length: 1500
  • database: ena
  • NCBI tax ID: 1315283

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudoalteromonas translucida KMM 520GCA_001465295completencbi1315283
66792Pseudoalteromonas translucida KMM 5201315283.4completepatric1315283
66792Pseudoalteromonas translucida KMM 5202654587552completeimg1315283

GC content

  • @ref: 5339
  • GC-content: 46.3

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes84.974no
gram-positiveno98.992no
anaerobicno96.839no
aerobicyes89.539no
halophileno53.187no
spore-formingno95.114no
glucose-utilyes91.573no
motileyes89.846no
thermophileno99.13yes
glucose-fermentno72.337no

External links

@ref: 5339

culture collection no.: DSM 14402, ATCC BAA 315, KMM 520, LMG 19696, CIP 107731

straininfo link

  • @ref: 81903
  • straininfo: 377531

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12361284Pseudoalteromonas translucida sp. nov. and Pseudoalteromonas paragorgicola sp. nov., and emended description of the genus.Ivanova EP, Sawabe T, Lysenko AM, Gorshkova NM, Hayashi K, Zhukova NV, Nicolau DV, Christen R, Mikhailov VVInt J Syst Evol Microbiol10.1099/00207713-52-5-17592002Animals, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phenotype, Phylogeny, Porifera/microbiology, Pseudoalteromonas/*classification/genetics/isolation & purification/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Species SpecificityGenetics
Genetics26849967Complete genome sequence of a marine bacterium with two chromosomes, Pseudoalteromonas translucida KMM 520(T).Rong JC, Liu M, Li Y, Sun TY, Pang XH, Qin QL, Chen XL, Xie BBMar Genomics10.1016/j.margen.2016.01.0072016Chromosomes, Bacterial/*genetics, Gammaproteobacteria/*genetics, Genome, Bacterial/*genetics
Metabolism34478496Orthogonal CRISPR-associated transposases for parallel and multiplexed chromosomal integration.Yang S, Zhang Y, Xu J, Zhang J, Zhang J, Yang J, Jiang Y, Yang SNucleic Acids Res10.1093/nar/gkab7522021CRISPR-Associated Proteins/metabolism, CRISPR-Cas Systems/*genetics, Cell Engineering/*methods, Escherichia coli/genetics, Pseudoalteromonas/*genetics, RNA, Bacterial/genetics, Synthetic Biology/methods, Transposases/genetics/*metabolism, Vibrio cholerae/*genetics

Reference

@idauthorscataloguedoi/urltitle
5339Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14402)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14402
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
42044Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5199
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
81903Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID377531.1StrainInfo: A central database for resolving microbial strain identifiers
123574Curators of the CIPCollection of Institut Pasteur (CIP 107731)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107731