Strain identifier
BacDive ID: 12691
Type strain:
Species: Pseudoalteromonas translucida
Strain history: CIP <- 2002, E. Ivanova, Swinburne Inst., Victoria, Australia
NCBI tax ID(s): 1315283 (strain), 166935 (species)
General
@ref: 5339
BacDive-ID: 12691
DSM-Number: 14402
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, motile
description: Pseudoalteromonas translucida DSM 14402 is an obligate aerobe, mesophilic, motile bacterium that was isolated from sea water.
NCBI tax id
NCBI tax id | Matching level |
---|---|
166935 | species |
1315283 | strain |
strain history
@ref | history |
---|---|
5339 | <- E. P. Ivanova, Swinburne Univ. of Technol., IRIS, Australia |
42044 | 2002, E. Ivanova, Swinburne Inst., Victoria, Australia |
123574 | CIP <- 2002, E. Ivanova, Swinburne Inst., Victoria, Australia |
doi: 10.13145/bacdive12691.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Pseudoalteromonadaceae
- genus: Pseudoalteromonas
- species: Pseudoalteromonas translucida
- full scientific name: Pseudoalteromonas translucida Ivanova et al. 2002
@ref: 5339
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas translucida
full scientific name: Pseudoalteromonas translucida Ivanova et al. 2002
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 99.131 | ||
69480 | 99.987 | negative | ||
123574 | no | negative | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5339 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
42044 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
123574 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5339 | positive | growth | 28 | mesophilic |
42044 | positive | growth | 25 | mesophilic |
123574 | positive | growth | 5-30 | |
123574 | no | growth | 37 | mesophilic |
123574 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 123574
- oxygen tolerance: obligate aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.941 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
123574 | NaCl | positive | growth | 2-8 % |
123574 | NaCl | no | growth | 0 % |
123574 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
123574 | 4853 | esculin | - | hydrolysis |
123574 | 17632 | nitrate | - | reduction |
123574 | 16301 | nitrite | - | reduction |
123574 | 17632 | nitrate | - | respiration |
metabolite production
- @ref: 123574
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
123574 | oxidase | + | |
123574 | beta-galactosidase | - | 3.2.1.23 |
123574 | alcohol dehydrogenase | - | 1.1.1.1 |
123574 | gelatinase | + | |
123574 | amylase | - | |
123574 | caseinase | + | 3.4.21.50 |
123574 | catalase | + | 1.11.1.6 |
123574 | tween esterase | + | |
123574 | lysine decarboxylase | - | 4.1.1.18 |
123574 | ornithine decarboxylase | - | 4.1.1.17 |
123574 | tryptophan deaminase | - | |
123574 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123574 | - | + | + | + | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123574 | + | - | + | + | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | + | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | + | + | - | + | + | - | + | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|
5339 | sea water | Sea of Japan | Russia | RUS | Asia | |
123574 | Environment, Seawater | Japan | JPN | Asia | 1997 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
5339 | 1 | Risk group (German classification) |
123574 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 5339
- description: Pseudoalteromonas sp. KMM 520 16S ribosomal RNA gene, partial sequence
- accession: AY040230
- length: 1500
- database: ena
- NCBI tax ID: 1315283
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Pseudoalteromonas translucida KMM 520 | GCA_001465295 | complete | ncbi | 1315283 |
66792 | Pseudoalteromonas translucida KMM 520 | 1315283.4 | complete | patric | 1315283 |
66792 | Pseudoalteromonas translucida KMM 520 | 2654587552 | complete | img | 1315283 |
GC content
- @ref: 5339
- GC-content: 46.3
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | yes | 84.974 | no |
gram-positive | no | 98.992 | no |
anaerobic | no | 96.839 | no |
aerobic | yes | 89.539 | no |
halophile | no | 53.187 | no |
spore-forming | no | 95.114 | no |
glucose-util | yes | 91.573 | no |
motile | yes | 89.846 | no |
thermophile | no | 99.13 | yes |
glucose-ferment | no | 72.337 | no |
External links
@ref: 5339
culture collection no.: DSM 14402, ATCC BAA 315, KMM 520, LMG 19696, CIP 107731
straininfo link
- @ref: 81903
- straininfo: 377531
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 12361284 | Pseudoalteromonas translucida sp. nov. and Pseudoalteromonas paragorgicola sp. nov., and emended description of the genus. | Ivanova EP, Sawabe T, Lysenko AM, Gorshkova NM, Hayashi K, Zhukova NV, Nicolau DV, Christen R, Mikhailov VV | Int J Syst Evol Microbiol | 10.1099/00207713-52-5-1759 | 2002 | Animals, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phenotype, Phylogeny, Porifera/microbiology, Pseudoalteromonas/*classification/genetics/isolation & purification/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Species Specificity | Genetics |
Genetics | 26849967 | Complete genome sequence of a marine bacterium with two chromosomes, Pseudoalteromonas translucida KMM 520(T). | Rong JC, Liu M, Li Y, Sun TY, Pang XH, Qin QL, Chen XL, Xie BB | Mar Genomics | 10.1016/j.margen.2016.01.007 | 2016 | Chromosomes, Bacterial/*genetics, Gammaproteobacteria/*genetics, Genome, Bacterial/*genetics | |
Metabolism | 34478496 | Orthogonal CRISPR-associated transposases for parallel and multiplexed chromosomal integration. | Yang S, Zhang Y, Xu J, Zhang J, Zhang J, Yang J, Jiang Y, Yang S | Nucleic Acids Res | 10.1093/nar/gkab752 | 2021 | CRISPR-Associated Proteins/metabolism, CRISPR-Cas Systems/*genetics, Cell Engineering/*methods, Escherichia coli/genetics, Pseudoalteromonas/*genetics, RNA, Bacterial/genetics, Synthetic Biology/methods, Transposases/genetics/*metabolism, Vibrio cholerae/*genetics |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
5339 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14402) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14402 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
42044 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5199 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
68382 | Automatically annotated from API zym | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
81903 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID377531.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
123574 | Curators of the CIP | Collection of Institut Pasteur (CIP 107731) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107731 |