Strain identifier

BacDive ID: 12680

Type strain: Yes

Species: Pseudoalteromonas luteoviolacea

Strain Designation: CH 130, CH130

Strain history: CIP <- 1993, M. Gauthier, INSERM, Nice, France: strain CH130

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2424

BacDive-ID: 12680

DSM-Number: 6061

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Pseudoalteromonas luteoviolacea CH 130 is a mesophilic, motile bacterium that was isolated from surface seawater.

NCBI tax id

NCBI tax idMatching level
43657species
1365250strain

strain history

@refhistory
2424<- ATCC <- M.J. Gauthier, Cerbom CH 130
420231993, M. Gauthier, INSERM, Nice, France: strain CH30
67770IAM 14710 <-- NCIMB 1893 <-- M. Aubert.
120697CIP <- 1993, M. Gauthier, INSERM, Nice, France: strain CH130

doi: 10.13145/bacdive12680.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Pseudoalteromonadaceae
  • genus: Pseudoalteromonas
  • species: Pseudoalteromonas luteoviolacea
  • full scientific name: Pseudoalteromonas luteoviolacea (Gauthier 1982 ex Gauthier 1976) Gauthier et al. 1995
  • synonyms

    @refsynonym
    20215Alteromonas luteoviolaceus
    20215Alteromonas luteoviolacea

@ref: 2424

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas luteoviolacea

full scientific name: Pseudoalteromonas luteoviolacea (Gauthier 1982) Gauthier et al. 1995

strain designation: CH 130, CH130

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes92.821
6948099.968negative
120697yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2424BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
42023Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
120697CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
2424positivegrowth25mesophilic
42023positivegrowth22psychrophilic
67770positivegrowth25mesophilic
120697positivegrowth22-37
120697nogrowth5psychrophilic
120697nogrowth10psychrophilic

culture pH

  • @ref: 120697
  • ability: no
  • type: growth
  • pH: 6

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.791

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1206974853esculin-hydrolysis
12069717632nitrate-reduction
12069716301nitrite-reduction

antibiotic resistance

  • @ref: 120697
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 120697
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
120697oxidase+
120697beta-galactosidase-3.2.1.23
120697alcohol dehydrogenase-1.1.1.1
120697gelatinase+
120697amylase-
120697caseinase-3.4.21.50
120697catalase-1.11.1.6
120697tween esterase-
120697lecithinase-
120697lysine decarboxylase-4.1.1.18
120697ornithine decarboxylase-4.1.1.17
120697tryptophan deaminase-
120697urease-3.5.1.5

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120697---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
2424surface seawater
67770Surface seawater, neritic zoneNiceFranceFRAEurope
120697Environment, Surface seawaterNiceFranceFRAEurope1976

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Surface water

taxonmaps

  • @ref: 69479
  • File name: preview.99_553.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_57;96_353;97_393;98_450;99_553&stattab=map
  • Last taxonomy: Pseudoalteromonas
  • 16S sequence: X82144
  • Sequence Identity:
  • Total samples: 4022
  • soil counts: 76
  • aquatic counts: 3297
  • animal counts: 636
  • plant counts: 13

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
24241Risk group (German classification)
1206971Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pseudoalteromonas luteoviolacea gene for 16S rRNA, partial sequence, strain: NBRC 103183AB6819811458ena43657
20218A.luteoviolacea 16S rRNA gene (NCIMB 1893T)X821441431ena43657

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudoalteromonas luteoviolacea DSM 6061 CH130GCA_014925325chromosomencbi1365250
66792Pseudoalteromonas luteoviolacea DSM 60611365250.3wgspatric1365250
66792Pseudoalteromonas luteoviolacea DSM 6061 strain CH1301365250.6wgspatric1365250
66792Pseudoalteromonas luteoviolacea DSM60612728369620draftimg1365250
67770Pseudoalteromonas luteoviolacea DSM 6061GCA_001625655contigncbi1365250

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes89.625no
flagellatedyes89.625no
gram-positiveno99.117no
anaerobicno94.768no
aerobicyes85.118no
halophileyes51.247no
spore-formingno93.214no
thermophileno99.556yes
glucose-utilyes90.125no
glucose-fermentno73.683no

External links

@ref: 2424

culture collection no.: DSM 6061, ATCC 33492, NCIMB 1893, JCM 21275, CIP 103718, IAM 14710, LMG 2871, NBRC 103183

straininfo link

  • @ref: 81891
  • straininfo: 868

literature

  • topic: Metabolism
  • Pubmed-ID: 18504575
  • title: The macromolecule with antimicrobial activity synthesized by Pseudoalteromonas luteoviolacea strains is an L-amino acid oxidase.
  • authors: Gomez D, Espinosa E, Bertazzo M, Lucas-Elio P, Solano F, Sanchez-Amat A
  • journal: Appl Microbiol Biotechnol
  • DOI: 10.1007/s00253-008-1499-x
  • year: 2008
  • mesh: Amino Acids/metabolism, Anti-Bacterial Agents/chemistry/*metabolism/pharmacology, Bacterial Proteins/chemistry/genetics/*metabolism/pharmacology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Escherichia coli/drug effects, L-Amino Acid Oxidase/chemistry/genetics/*metabolism/pharmacology, Molecular Sequence Data, Pseudoalteromonas/chemistry/*enzymology/genetics/*isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Substrate Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2424Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6061)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6061
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42023Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15547
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
81891Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID868.1StrainInfo: A central database for resolving microbial strain identifiers
120697Curators of the CIPCollection of Institut Pasteur (CIP 103718)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103718