Strain identifier
BacDive ID: 12680
Type strain:
Species: Pseudoalteromonas luteoviolacea
Strain Designation: CH 130, CH130
Strain history: CIP <- 1993, M. Gauthier, INSERM, Nice, France: strain CH130
NCBI tax ID(s): 1365250 (strain), 43657 (species)
General
@ref: 2424
BacDive-ID: 12680
DSM-Number: 6061
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Pseudoalteromonas luteoviolacea CH 130 is a mesophilic, motile bacterium that was isolated from surface seawater.
NCBI tax id
NCBI tax id | Matching level |
---|---|
43657 | species |
1365250 | strain |
strain history
@ref | history |
---|---|
2424 | <- ATCC <- M.J. Gauthier, Cerbom CH 130 |
42023 | 1993, M. Gauthier, INSERM, Nice, France: strain CH30 |
67770 | IAM 14710 <-- NCIMB 1893 <-- M. Aubert. |
120697 | CIP <- 1993, M. Gauthier, INSERM, Nice, France: strain CH130 |
doi: 10.13145/bacdive12680.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Pseudoalteromonadaceae
- genus: Pseudoalteromonas
- species: Pseudoalteromonas luteoviolacea
- full scientific name: Pseudoalteromonas luteoviolacea (Gauthier 1982 ex Gauthier 1976) Gauthier et al. 1995
synonyms
@ref synonym 20215 Alteromonas luteoviolaceus 20215 Alteromonas luteoviolacea
@ref: 2424
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas luteoviolacea
full scientific name: Pseudoalteromonas luteoviolacea (Gauthier 1982) Gauthier et al. 1995
strain designation: CH 130, CH130
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 92.821 | ||
69480 | 99.968 | negative | ||
120697 | yes | negative | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
2424 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
42023 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
120697 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2424 | positive | growth | 25 | mesophilic |
42023 | positive | growth | 22 | psychrophilic |
67770 | positive | growth | 25 | mesophilic |
120697 | positive | growth | 22-37 | |
120697 | no | growth | 5 | psychrophilic |
120697 | no | growth | 10 | psychrophilic |
culture pH
- @ref: 120697
- ability: no
- type: growth
- pH: 6
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.791 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
120697 | 4853 | esculin | - | hydrolysis |
120697 | 17632 | nitrate | - | reduction |
120697 | 16301 | nitrite | - | reduction |
antibiotic resistance
- @ref: 120697
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 120697
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
120697 | oxidase | + | |
120697 | beta-galactosidase | - | 3.2.1.23 |
120697 | alcohol dehydrogenase | - | 1.1.1.1 |
120697 | gelatinase | + | |
120697 | amylase | - | |
120697 | caseinase | - | 3.4.21.50 |
120697 | catalase | - | 1.11.1.6 |
120697 | tween esterase | - | |
120697 | lecithinase | - | |
120697 | lysine decarboxylase | - | 4.1.1.18 |
120697 | ornithine decarboxylase | - | 4.1.1.17 |
120697 | tryptophan deaminase | - | |
120697 | urease | - | 3.5.1.5 |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120697 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|
2424 | surface seawater | |||||
67770 | Surface seawater, neritic zone | Nice | France | FRA | Europe | |
120697 | Environment, Surface seawater | Nice | France | FRA | Europe | 1976 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Surface water |
taxonmaps
- @ref: 69479
- File name: preview.99_553.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_57;96_353;97_393;98_450;99_553&stattab=map
- Last taxonomy: Pseudoalteromonas
- 16S sequence: X82144
- Sequence Identity:
- Total samples: 4022
- soil counts: 76
- aquatic counts: 3297
- animal counts: 636
- plant counts: 13
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
2424 | 1 | Risk group (German classification) |
120697 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Pseudoalteromonas luteoviolacea gene for 16S rRNA, partial sequence, strain: NBRC 103183 | AB681981 | 1458 | ena | 43657 |
20218 | A.luteoviolacea 16S rRNA gene (NCIMB 1893T) | X82144 | 1431 | ena | 43657 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Pseudoalteromonas luteoviolacea DSM 6061 CH130 | GCA_014925325 | chromosome | ncbi | 1365250 |
66792 | Pseudoalteromonas luteoviolacea DSM 6061 | 1365250.3 | wgs | patric | 1365250 |
66792 | Pseudoalteromonas luteoviolacea DSM 6061 strain CH130 | 1365250.6 | wgs | patric | 1365250 |
66792 | Pseudoalteromonas luteoviolacea DSM6061 | 2728369620 | draft | img | 1365250 |
67770 | Pseudoalteromonas luteoviolacea DSM 6061 | GCA_001625655 | contig | ncbi | 1365250 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 89.625 | no |
flagellated | yes | 89.625 | no |
gram-positive | no | 99.117 | no |
anaerobic | no | 94.768 | no |
aerobic | yes | 85.118 | no |
halophile | yes | 51.247 | no |
spore-forming | no | 93.214 | no |
thermophile | no | 99.556 | yes |
glucose-util | yes | 90.125 | no |
glucose-ferment | no | 73.683 | no |
External links
@ref: 2424
culture collection no.: DSM 6061, ATCC 33492, NCIMB 1893, JCM 21275, CIP 103718, IAM 14710, LMG 2871, NBRC 103183
straininfo link
- @ref: 81891
- straininfo: 868
literature
- topic: Metabolism
- Pubmed-ID: 18504575
- title: The macromolecule with antimicrobial activity synthesized by Pseudoalteromonas luteoviolacea strains is an L-amino acid oxidase.
- authors: Gomez D, Espinosa E, Bertazzo M, Lucas-Elio P, Solano F, Sanchez-Amat A
- journal: Appl Microbiol Biotechnol
- DOI: 10.1007/s00253-008-1499-x
- year: 2008
- mesh: Amino Acids/metabolism, Anti-Bacterial Agents/chemistry/*metabolism/pharmacology, Bacterial Proteins/chemistry/genetics/*metabolism/pharmacology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Escherichia coli/drug effects, L-Amino Acid Oxidase/chemistry/genetics/*metabolism/pharmacology, Molecular Sequence Data, Pseudoalteromonas/chemistry/*enzymology/genetics/*isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Substrate Specificity
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2424 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6061) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6061 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
42023 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15547 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
81891 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID868.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120697 | Curators of the CIP | Collection of Institut Pasteur (CIP 103718) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103718 |