Strain identifier
BacDive ID: 12677
Type strain:
Species: Pseudoalteromonas citrea
Strain history: CIP <- 1994, NCIMB <- M. Aubert, Nice, France
NCBI tax ID(s): 1117314 (strain), 43655 (species)
General
@ref: 3379
BacDive-ID: 12677
DSM-Number: 8771
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Pseudoalteromonas citrea DSM 8771 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1117314 | strain |
43655 | species |
strain history
@ref | history |
---|---|
3379 | <- ATCC <- M. J. Gauthier, 10 |
118295 | CIP <- 1994, NCIMB <- M. Aubert, Nice, France |
doi: 10.13145/bacdive12677.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Pseudoalteromonadaceae
- genus: Pseudoalteromonas
- species: Pseudoalteromonas citrea
- full scientific name: Pseudoalteromonas citrea (Gauthier 1977) Gauthier et al. 1995
synonyms
- @ref: 20215
- synonym: Alteromonas citrea
@ref: 3379
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas citrea
full scientific name: Pseudoalteromonas citrea (Gauthier 1977) Gauthier et al. 1995 emend. Ivanova et al. 1998
type strain: yes
Morphology
cell morphology
- @ref: 118295
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3379 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
42030 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
118295 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3379 | positive | growth | 26 | mesophilic |
42030 | positive | growth | 22 | psychrophilic |
118295 | positive | growth | 10-41 | |
118295 | no | growth | 5 | psychrophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 118295
- oxygen tolerance: obligate aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
118295 | 16947 | citrate | - | carbon source |
118295 | 4853 | esculin | + | hydrolysis |
118295 | 17632 | nitrate | - | reduction |
118295 | 16301 | nitrite | - | reduction |
antibiotic resistance
- @ref: 118295
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: yes
- is resistant: no
metabolite production
- @ref: 118295
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 118295
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
118295 | oxidase | + | |
118295 | beta-galactosidase | + | 3.2.1.23 |
118295 | alcohol dehydrogenase | - | 1.1.1.1 |
118295 | gelatinase | + | |
118295 | DNase | - | |
118295 | caseinase | + | 3.4.21.50 |
118295 | catalase | + | 1.11.1.6 |
118295 | lecithinase | + | |
118295 | lysine decarboxylase | - | 4.1.1.18 |
118295 | ornithine decarboxylase | - | 4.1.1.17 |
118295 | urease | - | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
3379 | seawater | ||||
118295 | Environment, Surface seawater | Nice | France | FRA | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
3379 | 1 | Risk group (German classification) |
118295 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 3379
- description: A.citrea 16S rRNA gene (NCIMB 1889T)
- accession: X82137
- length: 1436
- database: ena
- NCBI tax ID: 43655
Genome sequences
- @ref: 66792
- description: Pseudoalteromonas citrea DSM 8771
- accession: GCA_000238375
- assembly level: contig
- database: ncbi
- NCBI tax ID: 43655
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 88.655 | no |
motile | yes | 88.655 | no |
flagellated | yes | 90.808 | no |
flagellated | yes | 90.808 | no |
gram-positive | no | 98.859 | no |
gram-positive | no | 98.859 | no |
anaerobic | no | 96.744 | no |
anaerobic | no | 96.744 | no |
aerobic | yes | 84.468 | no |
aerobic | yes | 84.468 | no |
halophile | yes | 51.879 | no |
halophile | yes | 51.879 | no |
spore-forming | no | 93.02 | no |
spore-forming | no | 93.02 | no |
thermophile | no | 99.54 | yes |
thermophile | no | 99.54 | yes |
glucose-util | yes | 92.434 | no |
glucose-util | yes | 92.434 | no |
glucose-ferment | no | 72.435 | no |
glucose-ferment | no | 72.435 | no |
External links
@ref: 3379
culture collection no.: DSM 8771, ATCC 29719, DSM 6058, NCMB 1889, CIP 104113, CECT 575, LMG 2863, NCIMB 1889
straininfo link
- @ref: 81888
- straininfo: 7818
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
3379 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 8771) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-8771 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
42030 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15986 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
81888 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID7818.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
118295 | Curators of the CIP | Collection of Institut Pasteur (CIP 104113) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104113 |