Strain identifier

BacDive ID: 12677

Type strain: Yes

Species: Pseudoalteromonas citrea

Strain history: CIP <- 1994, NCIMB <- M. Aubert, Nice, France

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General

@ref: 3379

BacDive-ID: 12677

DSM-Number: 8771

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Pseudoalteromonas citrea DSM 8771 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

NCBI tax id

NCBI tax idMatching level
1117314strain
43655species

strain history

@refhistory
3379<- ATCC <- M. J. Gauthier, 10
118295CIP <- 1994, NCIMB <- M. Aubert, Nice, France

doi: 10.13145/bacdive12677.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Pseudoalteromonadaceae
  • genus: Pseudoalteromonas
  • species: Pseudoalteromonas citrea
  • full scientific name: Pseudoalteromonas citrea (Gauthier 1977) Gauthier et al. 1995
  • synonyms

    • @ref: 20215
    • synonym: Alteromonas citrea

@ref: 3379

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas citrea

full scientific name: Pseudoalteromonas citrea (Gauthier 1977) Gauthier et al. 1995 emend. Ivanova et al. 1998

type strain: yes

Morphology

cell morphology

  • @ref: 118295
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3379BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
42030Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
118295CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
3379positivegrowth26mesophilic
42030positivegrowth22psychrophilic
118295positivegrowth10-41
118295nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 118295
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11829516947citrate-carbon source
1182954853esculin+hydrolysis
11829517632nitrate-reduction
11829516301nitrite-reduction

antibiotic resistance

  • @ref: 118295
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 118295
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 118295
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
118295oxidase+
118295beta-galactosidase+3.2.1.23
118295alcohol dehydrogenase-1.1.1.1
118295gelatinase+
118295DNase-
118295caseinase+3.4.21.50
118295catalase+1.11.1.6
118295lecithinase+
118295lysine decarboxylase-4.1.1.18
118295ornithine decarboxylase-4.1.1.17
118295urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
3379seawater
118295Environment, Surface seawaterNiceFranceFRAEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
33791Risk group (German classification)
1182951Risk group (French classification)

Sequence information

16S sequences

  • @ref: 3379
  • description: A.citrea 16S rRNA gene (NCIMB 1889T)
  • accession: X82137
  • length: 1436
  • database: ena
  • NCBI tax ID: 43655

Genome sequences

  • @ref: 66792
  • description: Pseudoalteromonas citrea DSM 8771
  • accession: GCA_000238375
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 43655

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes88.655no
motileyes88.655no
flagellatedyes90.808no
flagellatedyes90.808no
gram-positiveno98.859no
gram-positiveno98.859no
anaerobicno96.744no
anaerobicno96.744no
aerobicyes84.468no
aerobicyes84.468no
halophileyes51.879no
halophileyes51.879no
spore-formingno93.02no
spore-formingno93.02no
thermophileno99.54yes
thermophileno99.54yes
glucose-utilyes92.434no
glucose-utilyes92.434no
glucose-fermentno72.435no
glucose-fermentno72.435no

External links

@ref: 3379

culture collection no.: DSM 8771, ATCC 29719, DSM 6058, NCMB 1889, CIP 104113, CECT 575, LMG 2863, NCIMB 1889

straininfo link

  • @ref: 81888
  • straininfo: 7818

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3379Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 8771)https://www.dsmz.de/collection/catalogue/details/culture/DSM-8771
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
42030Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15986
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
81888Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID7818.1StrainInfo: A central database for resolving microbial strain identifiers
118295Curators of the CIPCollection of Institut Pasteur (CIP 104113)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104113