Strain identifier
BacDive ID: 12676
Type strain: 
Species: Pseudoalteromonas aurantia
Strain Designation: Cerbom 208
Strain history: <- ATCC <- M.J. Gauthier, Cerbom 208
NCBI tax ID(s): 43654 (species)
version 8.1 (current version)
General
@ref: 2454
BacDive-ID: 12676
DSM-Number: 6057
keywords: genome sequence, 16S sequence, Bacteria, psychrophilic
description: Pseudoalteromonas aurantia Cerbom 208 is a psychrophilic bacterium that was isolated from surface seawater.
NCBI tax id
- NCBI tax id: 43654
- Matching level: species
strain history
- @ref: 2454
- history: <- ATCC <- M.J. Gauthier, Cerbom 208
doi: 10.13145/bacdive12676.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Pseudoalteromonadaceae
- genus: Pseudoalteromonas
- species: Pseudoalteromonas aurantia
- full scientific name: Pseudoalteromonas aurantia (Gauthier and Breittmayer 1979) Gauthier et al. 1995
synonyms
- @ref: 20215
- synonym: Alteromonas aurantia
@ref: 2454
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas aurantia
full scientific name: Pseudoalteromonas aurantia (Gauthier and Breittmayer 1979) Gauthier et al. 1995
strain designation: Cerbom 208
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2454
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 2454
- growth: positive
- type: growth
- temperature: 19
- range: psychrophilic
Isolation, sampling and environmental information
isolation
- @ref: 2454
- sample type: surface seawater
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Surface water |
Safety information
risk assessment
- @ref: 2454
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: A.aurantia 16S rRNA gene (ATCC 33046T)
- accession: X82135
- length: 1436
- database: ena
- NCBI tax ID: 43654
Genome sequences
- @ref: 66792
- description: Pseudoalteromonas aurantia 208
- accession: 1314867.3
- assembly level: wgs
- database: patric
- NCBI tax ID: 1314867
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 89.955 | no |
| gram-positive | no | 99.017 | no |
| anaerobic | no | 97.408 | no |
| halophile | yes | 51.79 | no |
| spore-forming | no | 93.078 | no |
| glucose-util | yes | 90.218 | no |
| flagellated | yes | 92.814 | no |
| thermophile | no | 99.485 | yes |
| aerobic | yes | 82.636 | no |
| glucose-ferment | no | 74.365 | no |
External links
@ref: 2454
culture collection no.: DSM 6057, ATCC 33046, CIP 104200, NCIMB 2052
straininfo link
- @ref: 81887
- straininfo: 92481
literature
- topic: Metabolism
- Pubmed-ID: 31736903
- title: Structural Insight Into Chitin Degradation and Thermostability of a Novel Endochitinase From the Glycoside Hydrolase Family 18.
- authors: Wang YJ, Jiang WX, Zhang YS, Cao HY, Zhang Y, Chen XL, Li CY, Wang P, Zhang YZ, Song XY, Li PY
- journal: Front Microbiol
- DOI: 10.3389/fmicb.2019.02457
- year: 2019
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2454 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6057) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6057 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 81887 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92481.1 | StrainInfo: A central database for resolving microbial strain identifiers |