Strain identifier

BacDive ID: 12668

Type strain: Yes

Species: Tessaracoccus oleiagri

Strain Designation: SL014B-20A1

Strain history: <- Y.-Q. Tang, Peking Univ., Beijing, China; SL014B-20A1 <- H. Cai et al.

NCBI tax ID(s): 686624 (species)

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General

@ref: 16633

BacDive-ID: 12668

DSM-Number: 22955

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, rod-shaped, colony-forming

description: Tessaracoccus oleiagri SL014B-20A1 is a facultative anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from crude oil-polluted saline soil.

NCBI tax id

  • NCBI tax id: 686624
  • Matching level: species

strain history

  • @ref: 16633
  • history: <- Y.-Q. Tang, Peking Univ., Beijing, China; SL014B-20A1 <- H. Cai et al.

doi: 10.13145/bacdive12668.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Tessaracoccus
  • species: Tessaracoccus oleiagri
  • full scientific name: Tessaracoccus oleiagri Cai et al. 2011

@ref: 16633

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Propionibacteriaceae

genus: Tessaracoccus

species: Tessaracoccus oleiagri

full scientific name: Tessaracoccus oleiagri Cai et al. 2011 emend. Nouioui et al. 2018

strain designation: SL014B-20A1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
23333positive0.5-1.0 µm0.48 µmrod-shapedno
69480no90.476
69480positive100

colony morphology

  • @ref: 23333
  • colony color: bright yellow
  • colony shape: circular
  • incubation period: 7 days
  • medium used: ASW

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16633BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
23333ASWyes

culture temp

@refgrowthtypetemperaturerange
16633positivegrowth30mesophilic
23333positivegrowth4-50
23333positiveoptimum28mesophilic

culture pH

@refabilitytypepHPH range
23333positiveoptimum7.0
23333positivegrowth6.0-9.0alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 23333
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
23333no
69481no100
69480no99.953

halophily

@refsaltgrowthtested relationconcentration
23333NaClpositiveoptimum4 %
23333NaClpositivegrowth0-11 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2333317128adipate-assimilation
2333327689decanoate-assimilation
2333317108D-arabinose-assimilation
2333316024D-mannose-assimilation
2333325115malate-assimilation
2333317306maltose-assimilation
23333506227N-acetylglucosamine-assimilation
2333318401phenylacetate-assimilation
2333330849L-arabinose-carbon source
2333362968cellulose-hydrolysis
2333316449alanine-nitrogen source
2333329016arginine-nitrogen source
2333315428glycine-nitrogen source
2333327570histidine-nitrogen source
2333329991L-aspartate-nitrogen source
2333317203L-proline-nitrogen source
2333328044phenylalanine-nitrogen source
2333327897tryptophan-nitrogen source
2333315963ribitol-
2333318333D-arabitol-
2333312936D-galactose-
2333316899D-mannitol-
2333317924D-sorbitol-
2333365327D-xylose-
2333317716lactose-
2333328053melibiose-
23333320061methyl alpha-D-glucopyranoside-
2333316634raffinose-
2333330849L-arabinose+builds acid from
2333336219alpha-lactose+carbon source
2333316150benzoate+carbon source
2333316947citrate+carbon source
2333315824D-fructose+carbon source
2333312936D-galactose+carbon source
2333317634D-glucose+carbon source
2333316899D-mannitol+carbon source
2333316988D-ribose+carbon source
2333316813galactitol+carbon source
2333315740formate+carbon source
2333317268myo-inositol+carbon source
2333315443inulin+carbon source
2333316634raffinose+carbon source
2333326546rhamnose+carbon source
2333317814salicin+carbon source
2333330911sorbitol+carbon source
2333330031succinate+carbon source
2333327082trehalose+carbon source
2333318222xylose+carbon source
233334853esculin+degradation
2333317632nitrate+reduction
2333316024D-mannose+

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
233338309polymyxin byesyes300 Unit
2333317833gentamicinyesyes10 µg
233337507neomycinyesyes30 µg
2333318208penicillin gyesyes10 Unit
233332676amoxicillinyesyes10 µg
2333348923erythromycinyesyes15 µg
2333331845midecamycinyesyes15 µg
233333508ceftazidimeyesyes30 µg
23333204928cefotaximeyesyes30 µg
2333317698chloramphenicolyesyes30 µg
233336104kanamycinyesyes30 µg
2333327902tetracyclineyesyes30 µg
2333328001vancomycinyesyes30 µg
2333317076streptomycinyesyes300 µg
233339332sulfamethoxazoleyesyes300 µg
23333100241ciprofloxacinyesyes5 µg
2333328368novobiocinyesyes5 µg
2333328077rifampicinyesyes5 µg

metabolite production

  • @ref: 23333
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
23333alpha-fucosidase-3.2.1.51
23333alpha-galactosidase+3.2.1.22
23333alpha-glucosidase+3.2.1.20
23333arginine dihydrolase-3.5.3.6
23333beta-galactosidase-3.2.1.23
23333beta-glucuronidase+3.2.1.31
23333cystine arylamidase+3.4.11.3
23333esterase (C 4)+
23333gelatinase-
23333leucine arylamidase+3.4.11.1
23333lipase (C 14)-
23333naphthol-AS-BI-phosphohydrolase+
23333valine arylamidase+

Isolation, sampling and environmental information

isolation

  • @ref: 16633
  • sample type: crude oil-polluted saline soil
  • geographic location: oil-contaminated saline soil of Shengli Oilfield, China,
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination#Oil (Fuel)
#Engineered#Industrial#Oil reservoir
#Environmental#Terrestrial#Soil
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_27078.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15360;96_12610;97_15304;98_20285;99_27078&stattab=map
  • Last taxonomy: Tessaracoccus
  • 16S sequence: GU111566
  • Sequence Identity:
  • Total samples: 1307
  • soil counts: 286
  • aquatic counts: 272
  • animal counts: 687
  • plant counts: 62

Safety information

risk assessment

  • @ref: 16633
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16633
  • description: Tessaracoccus oleiagri strain SL014B-20A1 16S ribosomal RNA gene, partial sequence
  • accession: GU111566
  • length: 1460
  • database: ena
  • NCBI tax ID: 686624

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Tessaracoccus oleiagri CGMCC 1.9159GCA_900103275contigncbi686624
66792Tessaracoccus oleiagri strain CGMCC 1.9159686624.3wgspatric686624
66792Tessaracoccus oleiagri CGMCC 1.91592617270936draftimg686624

GC content

  • @ref: 16633
  • GC-content: 67.17
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveyes90.021yes
anaerobicno98.087no
halophileno91.768no
spore-formingno92.079no
glucose-utilyes85.144no
thermophileno97.024no
flagellatedno97.683yes
motileno89.798yes
aerobicyes62.936yes
glucose-fermentno68.082no

External links

@ref: 16633

culture collection no.: DSM 22955, CGMCC 1.9159

straininfo link

  • @ref: 81879
  • straininfo: 364090

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20802058Salinarimonas ramus sp. nov. and Tessaracoccus oleiagri sp. nov., isolated from a crude oil-contaminated saline soil.Cai M, Wang L, Cai H, Li Y, Wang YN, Tang YQ, Wu XLInt J Syst Evol Microbiol10.1099/ijs.0.025932-02010DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Petroleum/*analysis/microbiology, Phylogeny, Propionibacteriaceae/*classification/genetics/*isolation & purification/metabolism, RNA, Ribosomal, 16S/genetics, Sodium Chloride/*analysis, Soil/analysis, *Soil Microbiology, Soil Pollutants/*analysisMetabolism
Phylogeny25052391Tessaracoccus lapidicaptus sp. nov., an actinobacterium isolated from the deep subsurface of the Iberian pyrite belt.Puente-Sanchez F, Sanchez-Roman M, Amils R, Parro VInt J Syst Evol Microbiol10.1099/ijs.0.060038-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Iron, Molecular Sequence Data, *Phylogeny, Propionibacteriaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, *Sulfides, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny26869509Tessaracoccus flavus sp. nov., isolated from the drainage system of a lindane-producing factory.Kumari R, Singh P, Schumann P, Lal RInt J Syst Evol Microbiol10.1099/ijsem.0.0009582016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Hexachlorocyclohexane, India, *Industrial Waste, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Polyamines/chemistry, Propionibacteriaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16633Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22955)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22955
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23333Man Cai, Lu Wang, Hua Cai, Yan Li, Ya-Nan Wang, Yue-Qin Tang, Xiao-Lei Wu10.1099/ijs.0.025932-0Salinarimonas ramus sp. nov. and Tessaracoccus oleiagri sp. nov., isolated from a crude oil-contaminated saline soilIJSEM 61: 1767-1775 201120802058
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
81879Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID364090.1StrainInfo: A central database for resolving microbial strain identifiers