Strain identifier
BacDive ID: 12664
Type strain: 
Species: Tessaracoccus bendigoensis
Strain Designation: KSBR1
Strain history: DSM 12906 <-- A. M. Maszenan KSBR1 (=Ben 106).
NCBI tax ID(s): 1123357 (strain), 72764 (species)
version 8.1 (current version)
General
@ref: 4856
BacDive-ID: 12664
DSM-Number: 12906
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Tessaracoccus bendigoensis KSBR1 is a mesophilic, Gram-positive bacterium that was isolated from activated sludge.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 72764 | species |
| 1123357 | strain |
strain history
| @ref | history |
|---|---|
| 4856 | <- A.M. Maszenan; KSBR1 (= Ben 106) |
| 67770 | DSM 12906 <-- A. M. Maszenan KSBR1 (=Ben 106). |
doi: 10.13145/bacdive12664.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Propionibacteriaceae
- genus: Tessaracoccus
- species: Tessaracoccus bendigoensis
- full scientific name: Tessaracoccus bendigoensis Maszenan et al. 1999
@ref: 4856
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Propionibacteriaceae
genus: Tessaracoccus
species: Tessaracoccus bendigoensis
full scientific name: Tessaracoccus bendigoensis Maszenan et al. 1999 emend. Nouioui et al. 2018
strain designation: KSBR1
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 99.999
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 66793 | EM_DSM_12906_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_12906_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_12906_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_12906_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_12906_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
- @ref: 4856
- name: GLUCOSE SULFIDE MEDIUM (DSMZ Medium 851)
- growth: yes
- link: https://mediadive.dsmz.de/medium/851
- composition: Name: GLUCOSE SULFIDE MEDIUM (DSMZ Medium 851) Composition: Yeast extract 1.0 g/l (NH4)2SO4 0.5 g/l Na2S x 9 H2O 0.2 g/l Glucose 0.15 g/l Ca(NO3)2 0.1 g/l CaCO3 0.1 g/l KCl 0.05 g/l MgSO4 x 7 H2O 0.05 g/l K2HPO4 0.05 g/l Pyridoxine hydrochloride 0.0001 g/l Calcium pantothenate 5e-05 g/l Nicotinic acid 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavin 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l p-Aminobenzoic acid 1e-05 g/l Vitamin B12 1e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 4856 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 91 |
| 69480 | no | 99.889 |
murein
- @ref: 4856
- murein short key: A42.01
- type: A3gamma' LL-Dpm-Gly
observation
- @ref: 67770
- observation: quinones: MK-9(H4), MK-7(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 4856 | activated sludge | Australia, Victoria, Bendigo | Australia | AUS | Australia and Oceania |
| 67770 | Activated sludge biomass | Australia | AUS | Australia and Oceania |
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Activated sludge
Safety information
risk assessment
- @ref: 4856
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4856
- description: Tessaracoccus bendigoniensis 16S ribosomal RNA gene, partial sequence
- accession: AF038504
- length: 1465
- database: ena
- NCBI tax ID: 72764
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Tessaracoccus bendigoensis DSM 12906 | 1123357.3 | wgs | patric | 1123357 |
| 66792 | Tessaracoccus bendigoensis DSM 12906 | 2585427598 | draft | img | 1123357 |
| 67770 | Tessaracoccus bendigoensis DSM 12906 | GCA_900141915 | contig | ncbi | 1123357 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 4856 | 74 | high performance liquid chromatography (HPLC) |
| 67770 | 74 | thermal denaturation, midpoint method (Tm) |
| 67770 | 66.7 | genome sequence analysis |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 91 | no |
| motile | no | 88.526 | no |
| flagellated | no | 97.172 | no |
| gram-positive | yes | 88.951 | no |
| anaerobic | no | 94.296 | no |
| aerobic | yes | 54.437 | no |
| halophile | no | 92.721 | no |
| spore-forming | no | 84.091 | no |
| thermophile | no | 97.422 | yes |
| glucose-util | yes | 87.964 | no |
| glucose-ferment | yes | 51.212 | no |
External links
@ref: 4856
culture collection no.: DSM 12906, ACM 5119, JCM 13525, Ben 106, CGMCC 1.10443, CGMCC 1.6780
straininfo link
- @ref: 81876
- straininfo: 49381
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 10319465 | Tessaracoccus bendigoensis gen. nov., sp. nov., a gram-positive coccus occurring in regular packages or tetrads, isolated from activated sludge biomass. | Maszenan AM, Seviour RJ, Patel BK, Schumann P, Rees GN | Int J Syst Bacteriol | 10.1099/00207713-49-2-459 | 1999 | Bacterial Typing Techniques, Base Composition, Biomass, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Gram-Positive Cocci/*classification/*cytology/isolation & purification/physiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sewage/*microbiology, Temperature | Genetics |
| Phylogeny | 20802058 | Salinarimonas ramus sp. nov. and Tessaracoccus oleiagri sp. nov., isolated from a crude oil-contaminated saline soil. | Cai M, Wang L, Cai H, Li Y, Wang YN, Tang YQ, Wu XL | Int J Syst Evol Microbiol | 10.1099/ijs.0.025932-0 | 2010 | DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Petroleum/*analysis/microbiology, Phylogeny, Propionibacteriaceae/*classification/genetics/*isolation & purification/metabolism, RNA, Ribosomal, 16S/genetics, Sodium Chloride/*analysis, Soil/analysis, *Soil Microbiology, Soil Pollutants/*analysis | Metabolism |
| Phylogeny | 25052391 | Tessaracoccus lapidicaptus sp. nov., an actinobacterium isolated from the deep subsurface of the Iberian pyrite belt. | Puente-Sanchez F, Sanchez-Roman M, Amils R, Parro V | Int J Syst Evol Microbiol | 10.1099/ijs.0.060038-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Iron, Molecular Sequence Data, *Phylogeny, Propionibacteriaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, *Sulfides, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 28632118 | Tessaracoccus arenae sp. nov., isolated from sea sand. | Thongphrom C, Kim JH, Bora N, Kim W | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001907 | 2017 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Propionibacteriaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, *Silicon Dioxide, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4856 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12906) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12906 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 81876 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49381.1 | StrainInfo: A central database for resolving microbial strain identifiers |