Strain identifier

BacDive ID: 12650

Type strain: No

Species: Acidipropionibacterium jensenii

Strain Designation: 20

Strain history: T. Mitsuoka <-- ATCC 4870 <-- C. B. van Niel 120.

NCBI tax ID(s): 1749 (species)

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General

@ref: 8686

BacDive-ID: 12650

DSM-Number: 20279

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, human pathogen

description: Acidipropionibacterium jensenii 20 is an anaerobe, mesophilic human pathogen that was isolated from emmental cheese.

NCBI tax id

  • NCBI tax id: 1749
  • Matching level: species

strain history

@refhistory
8686<- Weihenstephan, Germany <- ATCC <- C.B. van Niel, 20 (Propionibacterium petersonii)
67770T. Mitsuoka <-- ATCC 4870 <-- C. B. van Niel 120.

doi: 10.13145/bacdive12650.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Acidipropionibacterium
  • species: Acidipropionibacterium jensenii
  • full scientific name: Acidipropionibacterium jensenii (van Niel 1928) Scholz and Kilian 2016

  • synonyms

    • @ref: 20215
    • synonym: Propionibacterium jensenii

@ref: 8686

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Propionibacteriaceae

genus: Acidipropionibacterium

species: Acidipropionibacterium jensenii

full scientific name: Acidipropionibacterium jensenii (van Niel 1928) Scholz and Kilian 2016 emend. Nouioui et al. 2018

strain designation: 20

type strain: no

Culture and growth conditions

culture medium

  • @ref: 8686
  • name: PROPIONIBACTERIUM AGAR (DSMZ Medium 91)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/91
  • composition: Name: PROPIONIBACTERIUM AGAR (DSMZ Medium 91) Composition: Agar 15.0 g/l Na-lactate 10.0 g/l Casein peptone 10.0 g/l Yeast extract 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8686positivegrowth30mesophilic
49123positivegrowth37mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8686anaerobe
49123anaerobe
49123microaerophile

murein

  • @ref: 8686
  • murein short key: A41.01
  • type: A3gamma LL-Dpm-Gly

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose+fermentation
6837916988D-ribose+fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol+fermentation
6837917306maltose+fermentation
6837917716lactose-fermentation
6837917992sucrose+fermentation
6837928087glycogen-fermentation
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source
6838129016arginine-hydrolysis
6838116988D-ribose+builds acid from
6838116899D-mannitol+builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose-builds acid from
6838116634raffinose-builds acid from
6838117992sucrose-builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol+builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose-builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6838035581indoleno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6838115688acetoin-
6838035581indole-

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68380serine arylamidase+
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68379catalase-1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    49123C15:010.215
    49123C16:06.816
    49123C17:02.617
    49123C18:02.318
    49123C14:0 3OH/C16:1 ISO I3.415.485
    49123C14:0 ISO 3OH3.115.117
    49123C15:0 ANTEISO24.714.711
    49123C15:0 ISO33.314.621
    49123C17:0 iso4.316.629
    49123C18:1 ω9c5.617.769
    49123C18:2 ω6,9c/C18:0 ANTE3.817.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
49123-+-+--+-+---++-++-+--

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
8686-----++/-----------++-++-+-+/-+-+
49123--++-++---+------++-++-++++-+

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
49123----+-++------+--+--------------

Isolation, sampling and environmental information

isolation

@refsample type
8686emmental cheese
49123Emmental cheese
67770Emmenthaler cheese

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Dairy product

taxonmaps

  • @ref: 69479
  • File name: preview.99_5608.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15360;96_2703;97_3321;98_4184;99_5608&stattab=map
  • Last taxonomy: Propionibacteriaceae
  • 16S sequence: LC145545
  • Sequence Identity:
  • Total samples: 3135
  • soil counts: 179
  • aquatic counts: 788
  • animal counts: 2096
  • plant counts: 72

Safety information

risk assessment

  • @ref: 8686
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Propionibacterium jensenii 16S-23S ribosomal RNA intergenic spacer region, complete sequenceAF218433322ena1749
67770Propionibacterium sp. JCM 6433 gene for 16S ribosomal RNA, partial sequence, strain: JCM 6433LC1455451468ena1827098

GC content

@refGC-contentmethod
868667.0
6777067thermal denaturation, midpoint method (Tm)

External links

@ref: 8686

culture collection no.: DSM 20279, ATCC 4870, CCM 1860, NCDO 565, NCIB 5962, CCUG 28150, LMG 16727, JCM 6433, NCIMB 5962, VPI 5169

straininfo link

  • @ref: 81863
  • straininfo: 92533

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8686Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20279)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20279
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
49123Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 28150)https://www.ccug.se/strain?id=28150
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68380Automatically annotated from API rID32A
68381Automatically annotated from API rID32STR
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81863Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92533.1StrainInfo: A central database for resolving microbial strain identifiers