Strain identifier

BacDive ID: 1265

Type strain: Yes

Species: Bacillus infantis

Strain history: CIP <- 2007, JCM <- 2005, K.S. Ko, ARFID, Seoul, Korea: strain SMC 4352-1

NCBI tax ID(s): 324767 (species)

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General

@ref: 7889

BacDive-ID: 1265

DSM-Number: 19098

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, pigmented, human pathogen

description: Bacillus infantis DSM 19098 is an obligate aerobe, mesophilic human pathogen that has a orange pigmentation and was isolated from blood of a newborn child with sepsis.

NCBI tax id

  • NCBI tax id: 324767
  • Matching level: species

strain history

@refhistory
7889<- JCM <- K.S. Ko, strain SMC 4352-1
67770K. S. Ko SMC 4352-1.
120103CIP <- 2007, JCM <- 2005, K.S. Ko, ARFID, Seoul, Korea: strain SMC 4352-1

doi: 10.13145/bacdive1265.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus infantis
  • full scientific name: Bacillus infantis Ko et al. 2006

@ref: 7889

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Bacillus

species: Bacillus infantis

full scientific name: Bacillus infantis Ko et al. 2006

type strain: yes

Morphology

cell morphology

@refcell lengthgram staincell shapemotility
228963-10 µm
22897positive
120103positiverod-shapedyes

colony morphology

  • @ref: 22898
  • colony color: pink

pigmentation

  • @ref: 22896
  • production: yes
  • name: orange

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7889CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
22895TSA + 5% sheep bloodyes
22897Blood agaryes
33303MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
120103CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6
120103CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
120103CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
22895positivegrowth37mesophilic
22896positivemaximum40thermophilic
22896positiveminimum10psychrophilic
7889positivegrowth30mesophilic
33303positivegrowth37mesophilic
67770positivegrowth37mesophilic

culture pH

  • @ref: 22895
  • ability: positive
  • type: optimum
  • pH: 7

Physiology and metabolism

oxygen tolerance

  • @ref: 120103
  • oxygen tolerance: obligate aerobe

compound production

  • @ref: 22895
  • compound: Acetoin

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
22895168082-dehydro-D-gluconate-growth
22895581435-dehydro-D-gluconate-growth
2289515963ribitol-growth
2289527613amygdalin-growth
2289518305arbutin-growth
2289517057cellobiose+/-growth
2289516947citrate+/-growth
2289517108D-arabinose-growth
2289518333D-arabitol-growth
2289517057cellobiose+growth
2289528847D-fucose+growth
2289512936D-galactose+growth
2289518391D-gluconate-growth
2289517634D-glucose+growth
2289562318D-lyxose-growth
2289516024D-mannose-growth
2289516634raffinose+growth
2289516443D-tagatose-growth
2289532528turanose-growth
2289565327D-xylose+growth
2289516813galactitol-growth
2289517113erythritol-growth
228954853esculin+growth
2289528260galactose+growth
228955291gelatin+/-hydrolysis
2289528066gentiobiose-growth
2289524265gluconate-growth
2289517754glycerol-growth
2289528087glycogen-growth
2289517268myo-inositol-growth
2289515443inulin-growth
2289530849L-arabinose-growth
2289518403L-arabitol-growth
2289518287L-fucose-growth
2289538030L-mannitol+growth
2289562345L-rhamnose-growth
2289517266L-sorbose+growth
2289565328L-xylose-growth
2289517716lactose+growth
2289517306maltose+growth
2289529864mannitol+growth
228956731melezitose-growth
2289528053melibiose+growth
2289537657methyl D-glucoside-growth
2289543943methyl alpha-D-mannoside-growth
2289574863methyl beta-D-xylopyranoside-growth
22895506227N-acetyl-D-glucosamine-growth
22895O-nitrophenyl-beta-D-galactopyranosid+/-growth
2289526546rhamnose-growth
2289533942ribose-growth
2289517814salicin+growth
2289530911sorbitol-growth
2289528017starch+growth
2289517992sucrose+growth
2289527082trehalose+growth
2289517151xylitol-growth
2289630089acetate+growth
22896casein+hydrolysis
2289617108D-arabinose-builds acid from
2289615824D-fructose+builds acid from
2289612936D-galactose+builds acid from
2289617634D-glucose+builds acid from
2289617634D-glucose+growth
2289616024D-mannose-growth
2289616988D-ribose+growth
2289627082trehalose+builds acid from
2289617151xylitol-builds acid from
2289665327D-xylose+builds acid from
228965291gelatin+hydrolysis
2289628087glycogen+builds acid from
2289615443inulin+builds acid from
2289624996lactate+growth
2289617716lactose+builds acid from
228966731melezitose-builds acid from
2289628053melibiose+builds acid from
2289628053melibiose+growth
2289625115malate+growth
2289628017starch+/-hydrolysis
2289617992sucrose+builds acid from
2289617992sucrose+growth
2289617632nitrate-reduction
22897581435-dehydro-D-gluconate+growth
2289727613amygdalin+growth
2289718305arbutin+growth
2289717057cellobiose+growth
2289765327D-xylose+growth
228974853esculin+growth
2289728757fructose+growth
2289728260galactose+growth
2289728066gentiobiose-growth
2289724265gluconate+growth
2289717234glucose+growth
2289717754glycerol-growth
2289728087glycogen+growth
2289717268myo-inositol-growth
2289715443inulin+growth
2289717716lactose+growth
2289717306maltose+growth
2289729864mannitol+growth
2289737684mannose-growth
2289728053melibiose+growth
2289737657methyl D-glucoside+growth
22897506227N-acetyl-D-glucosamine+growth
2289716634raffinose+growth
2289733942ribose-growth
2289717814salicin+growth
2289730911sorbitol+growth
2289728017starch+growth
2289717992sucrose+growth
2289727082trehalose+growth
2289717151xylitol-growth
2289817128adipate-growth
2289816947citrate-growth
2289817634D-glucose+growth
2289816899D-mannitol+growth
2289816024D-mannose-growth
228984853esculin+/-hydrolysis
2289824265gluconate+growth
2289816977L-alanine-growth
2289830849L-arabinose-growth
2289815971L-histidine-growth
2289817203L-proline-growth
2289817115L-serine-growth
2289824996lactate+growth
2289825115malate+growth
2289817306maltose+/-growth
22898506227N-acetyl-D-glucosamine+/-growth
2289817272propionate-growth
2289828017starch+hydrolysis
2289817632nitrate-reduction
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
683716731melezitose-builds acid from
6837127082trehalose+builds acid from
6837128053melibiose+builds acid from
6837117716lactose+builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol+builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose+builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
12010317632nitrate-reduction
12010316301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
2289515688acetoinyes
12010335581indoleno

metabolite tests

  • @ref: 22895
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
22895beta-galactosidase+/-3.2.1.23
22895gelatinase+/-
22895cytochrome oxidase+/-1.9.3.1
22896arginine dihydrolase-3.5.3.6
22896beta-galactosidase-3.2.1.23
22896gelatinase+
22897catalase+1.11.1.6
22897cytochrome oxidase-1.9.3.1
22898acid phosphatase-3.1.3.2
22898alkaline phosphatase-3.1.3.1
22898alpha-chymotrypsin+/-3.4.21.1
22898alpha-glucosidase+3.2.1.20
22898beta-galactosidase+3.2.1.23
22898cytochrome oxidase-1.9.3.1
22898leucine arylamidase-3.4.11.1
22898trypsin+3.4.21.4
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1
120103oxidase-
120103catalase+1.11.1.6
120103urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120103-----++++++-++-+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120103-----+---+/-++-----+------+/---+/-+++/-++/--+/-++---------+/---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120103---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7889blood of a newborn child with sepsisRepublic of KoreaKORAsia
67770Blood of a newborn child with sepsis
120103Human, Blood

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Infection#Patient
#Host Body Product#Fluids#Blood
#Host#Human#Child

taxonmaps

  • @ref: 69479
  • File name: preview.99_1435.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_264;97_962;98_1133;99_1435&stattab=map
  • Last taxonomy: Bacillaceae
  • 16S sequence: AY904032
  • Sequence Identity:
  • Total samples: 4054
  • soil counts: 2010
  • aquatic counts: 972
  • animal counts: 717
  • plant counts: 355

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
7889yes, in single cases1Risk group (German classification)
1201031Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7889
  • description: Bacillus infantis strain SMC 4352-1 16S ribosomal RNA gene, partial sequence
  • accession: AY904032
  • length: 1367
  • database: ena
  • NCBI tax ID: 324767

Genome sequences

  • @ref: 66792
  • description: Bacillus infantis DSM 19098
  • accession: 2928344086
  • assembly level: draft
  • database: img
  • NCBI tax ID: 324767

GC content

@refGC-contentmethod
2289740.8thermal denaturation, midpoint method (Tm)
788940.8

External links

@ref: 7889

culture collection no.: DSM 19098, JCM 13438, KCCM 90025, ABB 0427, CIP 109493, LMG 24756, SMC 4352-1

straininfo link

  • @ref: 70921
  • straininfo: 297133

literature

  • topic: Phylogeny
  • Pubmed-ID: 17082387
  • title: Bacillus infantis sp. nov. and Bacillus idriensis sp. nov., isolated from a patient with neonatal sepsis.
  • authors: Ko KS, Oh WS, Lee MY, Lee JH, Lee H, Peck KR, Lee NY, Song JH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.64213-0
  • year: 2006
  • mesh: Bacillus/*classification/genetics/*isolation & purification, Bacterial Typing Techniques, Carbohydrate Metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Female, Genes, rRNA, Humans, Infant, Newborn, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sepsis/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7889Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19098)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19098
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
22895Sung Wook Hong, Jung Min Park, Soo-Jin Kim, Kun Sub Chung10.1099/ijs.0.034892-0Bacillus eiseniae sp. nov., a swarming, moderately halotolerant bacterium isolated from the intestinal tract of an earthworm (Eisenia fetida L.)IJSEM 62: 2077-2083 201222021583
22896Herbert Seiler, Mareike Wenning, Verena Schmidt, Siegfried Scherer10.1099/ijs.0.036277-0Bacillus gottheilii sp. nov., isolated from a pharmaceutical manufacturing siteIJSEM 63: 867-872 201322634699
22897Kwan Soo Ko, Won Sup Oh, Mi Young Lee, Jang Ho Lee, Hyuck Lee, Kyong Ran Peck, Nam Yong Lee, Jae-Hoon Song10.1099/ijs.0.64213-0Bacillus infantis sp. nov. and Bacillus idriensis sp. nov., isolated from a patient with neonatal sepsisIJSEM 56: 2541-2544 200617082387
22898Ivone Vaz-Moreira, Vânia Figueira, Ana R. Lopes, Alexandre Lobo-da-Cunha, Cathrin Spröer, Peter Schumann, Olga C. Nunes, Célia M. Manaia10.1099/ijs.0.028605-0Bacillus purgationiresistans sp. nov., isolated from a drinking-water treatment plantIJSEM 62: 71-77 201221335493
33303Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7243
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70921Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297133.1StrainInfo: A central database for resolving microbial strain identifiers
120103Curators of the CIPCollection of Institut Pasteur (CIP 109493)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109493