Strain identifier

BacDive ID: 12646

Type strain: No

Species: Cutibacterium granulosum

Strain history: <- NCTC; NCTC 10387 <- ATCC; ATCC 11829 <- H. Seeliger; (Corynebacterium parvum) <- A. Prevot;

NCBI tax ID(s): 33011 (species)

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General

@ref: 8829

BacDive-ID: 12646

DSM-Number: 20458

keywords: Bacteria, anaerobe, mesophilic, human pathogen

description: Cutibacterium granulosum DSM 20458 is an anaerobe, mesophilic human pathogen of the family Propionibacteriaceae.

NCBI tax id

  • NCBI tax id: 33011
  • Matching level: species

strain history

  • @ref: 8829
  • history: <- NCTC; NCTC 10387 <- ATCC; ATCC 11829 <- H. Seeliger; (Corynebacterium parvum) <- A. Prevot;

doi: 10.13145/bacdive12646.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Cutibacterium
  • species: Cutibacterium granulosum
  • full scientific name: Cutibacterium granulosum (Prévot 1938) Scholz and Kilian 2016

  • synonyms

    @refsynonym
    20215Propionibacterium granulosum
    20215Corynebacterium granulosum

@ref: 8829

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Propionibacteriaceae

genus: Cutibacterium

species: Cutibacterium granulosum

full scientific name: Cutibacterium granulosum (Prévot 1938) Scholz and Kilian 2016 emend. Nouioui et al. 2018

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8829PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
8829COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 8829
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 8829
  • oxygen tolerance: anaerobe

murein

  • @ref: 8829
  • murein short key: A41.01
  • type: A3gamma LL-Dpm-Gly

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase-
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
8829-----+----------+-+-+/----++--+/-
8829-----+------------+-----++---

Safety information

risk assessment

  • @ref: 8829
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

GC content

  • @ref: 8829
  • GC-content: 59.0

External links

@ref: 8829

culture collection no.: DSM 20458, ATCC 11829, NCTC 10387

straininfo link

  • @ref: 81859
  • straininfo: 66612

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny824484Mitogenic activity of the cell walls of mycobacteria, nocardia, corynebacteria and anaerobic coryneforms.Azuma I, Taniyama T, Sugimura K, Aladin A, Yamamura YJpn J Microbiol10.1111/j.1348-0421.1976.tb00987.x1976Animals, B-Lymphocytes/immunology, *BCG Vaccine, Bacterial Proteins/analysis, Cell Wall/immunology, Corynebacterium diphtheriae/*immunology, Female, *Lymphocyte Activation, Male, Mice, *Mitogens, Mucoproteins, Mycobacterium bovis/*immunology, Mycolic Acids/immunology, Nocardia/*immunology, Polysaccharides, Bacterial, Propionibacterium/*immunology, Species Specificity, Spleen/immunology, T-Lymphocytes/immunology
Enzymology2818796Two-dimensional gel electrophoresis of ribosomal proteins from Propionibacterium acnes and granulosum.Dekio S, Hashimoto K, Makino MZentralbl Bakteriol10.1016/s0934-8840(89)80103-31989Animals, Electrophoresis, Gel, Two-Dimensional, Humans, Propionibacterium/*analysis/genetics, Propionibacterium acnes/*analysis/genetics, Ribosomal Proteins/*analysisPathogenicity

Reference

@idauthorscataloguedoi/urltitle
8829Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20458)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20458
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68380Automatically annotated from API rID32A
81859Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID66612.1StrainInfo: A central database for resolving microbial strain identifiers